View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15446_low_11 (Length: 361)
Name: NF15446_low_11
Description: NF15446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15446_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 208 - 342
Target Start/End: Original strand, 12381295 - 12381429
Alignment:
| Q |
208 |
accaggttgttccttcaaatataaccagaatcgagaagaagaaaattgtctttgaaaacaatatagaaagagagtttgatgcaattgtttttgctaccgg |
307 |
Q |
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| T |
12381295 |
accaggttgttccttcaaatataaccagaattgagaagaagaaaattgtctttgaaaacaatgtagaaagagagtttgatgcaattgtttttgctaccgg |
12381394 |
T |
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| Q |
308 |
ctacaaaagcatagctaatggatggctcaaggtat |
342 |
Q |
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| T |
12381395 |
ctataaaagtatagctaatggatggctcaaggtat |
12381429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 12381000 - 12381064
Alignment:
| Q |
1 |
aaagtcggccgttattgatgttggaaccattggaaagattaaggagggagctataaaggtaaatt |
65 |
Q |
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| T |
12381000 |
aaagtctgccgttattgatgttggaaccattggaaagattaaggagggtgctataaaggtaaatt |
12381064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 12381110 - 12381151
Alignment:
| Q |
166 |
ttttttaagtttattcaatatctaatgtatttggtctatata |
207 |
Q |
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| T |
12381110 |
ttttttaggttcattcaatatctaatgtatttggtctatata |
12381151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 210 - 342
Target Start/End: Original strand, 14353959 - 14354091
Alignment:
| Q |
210 |
caggttgttccttcaaatataaccagaatcgagaagaagaaaattgtctttgaaaacaatatagaaagagagtttgatgcaattgtttttgctaccggct |
309 |
Q |
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| T |
14353959 |
caggttgtttcttcatatattacgagaattgagaaaaagaaagttgtatttgaaaacaacatggaaaaagagtttgatgcgatcgtttttgcaactggct |
14354058 |
T |
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| Q |
310 |
acaaaagcatagctaatggatggctcaaggtat |
342 |
Q |
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| T |
14354059 |
acaaaagcatagctaatgggtggcttaaggtat |
14354091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 14353819 - 14353879
Alignment:
| Q |
1 |
aaagtcggccgttattgatgttggaaccattggaaagattaaggagggagctataaaggta |
61 |
Q |
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| T |
14353819 |
aaagtctgcagttattgatgttggaaccgttgaaaagattaaggaggggtctataaaggta |
14353879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 334
Target Start/End: Complemental strand, 43883628 - 43883500
Alignment:
| Q |
210 |
caggttgttccttcaaatata-accagaatcgagaagaagaaaattgtc---tttgaaaacaatatagaaagagagtttgatgcaattgtttttgctacc |
305 |
Q |
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||||||||||||||| |||| || ||||| ||||| |||||| |||| |||| |||||| || |||| ||||||||||| ||| ||||| || || |
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| T |
43883628 |
caggttgttccttcagatatttacgagaattgagaaaaagaaagttgtactatttggaaacaacatggaaaaagagtttgatgtaatcgttttcgcgact |
43883529 |
T |
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| Q |
306 |
ggctacaaaagcatagctaatggatggct |
334 |
Q |
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| T |
43883528 |
ggctacaaaagcatagctaatgggtggct |
43883500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 32082198 - 32082160
Alignment:
| Q |
167 |
tttttaagtttattcaatatctaatgtatttggtctata |
205 |
Q |
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| T |
32082198 |
tttttaagtttattcaacatctaatatatttggtctata |
32082160 |
T |
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