View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15446_low_18 (Length: 253)
Name: NF15446_low_18
Description: NF15446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15446_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 37960556 - 37960331
Alignment:
| Q |
11 |
ttatactgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcat |
110 |
Q |
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| T |
37960556 |
ttataccgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtatcgaaaagaagataagacatttaaagagtcat |
37960457 |
T |
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| Q |
111 |
gctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgttt |
210 |
Q |
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| T |
37960456 |
gctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctgtaactgtggttgctggttcaccgaaattggctgttt |
37960357 |
T |
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| Q |
211 |
atgatacagattttgggtgggggaag |
236 |
Q |
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| T |
37960356 |
atgagacagattttgggtgggggaag |
37960331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 37954613 - 37954522
Alignment:
| Q |
145 |
atagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaag |
236 |
Q |
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| T |
37954613 |
atagggaaatgtcaaaacctggtaagtctgttaatgtgattgctggttcaccgaatttggctgtttatgagacagattttggatgggggaag |
37954522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 232
Target Start/End: Original strand, 37907552 - 37907707
Alignment:
| Q |
77 |
tattgaaaagaagataagacattttaagagtcatgctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtcttta |
176 |
Q |
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| T |
37907552 |
tatttaaaagaagataagagattttaagagtgatgctttgttagaagctgaaacgttgatacctgattatatggaattattaaaacctggtaactcattt |
37907651 |
T |
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| Q |
177 |
actgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggg |
232 |
Q |
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| T |
37907652 |
gtagtggttgctgggtcacctaaacttgatgtttgtgagactgattttgggtgggg |
37907707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 37915639 - 37915860
Alignment:
| Q |
11 |
ttatactgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcat |
110 |
Q |
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| T |
37915639 |
ttatactgtagttgtaaataggggtgagttagttggaaaagatggtattcttgtggcggcaaatgctattgaacggaagataagagatttcaagagtgat |
37915738 |
T |
|
| Q |
111 |
gctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgttt |
210 |
Q |
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| T |
37915739 |
gccttgttgggagttgaaacgttgatgcctgattatagggaaataataaaaccaggtaactctgttaaaatggtttctgggtcgcctaaacttgatgttt |
37915838 |
T |
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| Q |
211 |
atgatacagattttgggtgggg |
232 |
Q |
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|||| || |||||||||||||| |
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| T |
37915839 |
atgagactgattttgggtgggg |
37915860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 3783787 - 3783877
Alignment:
| Q |
17 |
tgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagt |
107 |
Q |
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| T |
3783787 |
tgtggttgtaaagagggctgagttagttggaacaaatgggattgttgcggctgcaaatggtatcgaaaggaagataagagatttcaagagt |
3783877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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