View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15446_low_19 (Length: 250)
Name: NF15446_low_19
Description: NF15446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15446_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 44014261 - 44014496
Alignment:
| Q |
1 |
tagtgtgtgttatacctgaggaatggcaaggctggcaatggtgagaccagaaatgacatcagaacgaagaagggtgagagtatactgagaaccccattga |
100 |
Q |
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| T |
44014261 |
tagtgtgtgttatacctgaggaatggcaaggctggcaatggtgagaccagaaatgacatcagaacgaagaagggtgagagtatactgagaaccccattga |
44014360 |
T |
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| Q |
101 |
aaaatggggaacaagaattgaagggtaagaagaaactttgtaaaagatggttggtttttgaaacggtgtaaaggatcatcagggaagaagatttcagaga |
200 |
Q |
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| T |
44014361 |
aaaatggggaacaagaattgaagggtaagaagaaactttgtaaaagatggttggtttttgaaacggtgtaaaggatcatcggggaagaagatttcagaga |
44014460 |
T |
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| Q |
201 |
gtctgtgtttgagtttgttgagtgatgttctctctg |
236 |
Q |
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| T |
44014461 |
gtctgtgtttgagtttgttgagtgatgttctctctg |
44014496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 3172931 - 3172739
Alignment:
| Q |
12 |
atacctgaggaatggcaaggctggcaatggtgagaccagaaatgacatcagaacgaagaagggtgagagtatactgagaaccccattgaaaaatggggaa |
111 |
Q |
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| T |
3172931 |
atacctgaggaatggcgagactggcgatggtgagaccggatataatatcggagcgtaaaagattaagactatactgaggaccccattgaaaaatcggaaa |
3172832 |
T |
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| Q |
112 |
caagaattgaagggtaagaagaaactttgtaaaagatggttggtttttgaaacggtgtaaaggatcatcagggaagaagatttcagagagtct |
204 |
Q |
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| T |
3172831 |
catgtattgaagagccagaagaaactttgtgaaggaagtttggtttttgaatccatgaaaagggtcatcaggaaaaaagatttcagagagtct |
3172739 |
T |
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