View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15446_low_22 (Length: 210)

Name: NF15446_low_22
Description: NF15446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15446_low_22
NF15446_low_22
[»] chr2 (13 HSPs)
chr2 (3-127)||(44615203-44615327)
chr2 (1-51)||(44749611-44749661)
chr2 (53-127)||(44624626-44624700)
chr2 (121-197)||(39216839-39216919)
chr2 (3-40)||(44895473-44895510)
chr2 (6-62)||(39138428-39138484)
chr2 (64-127)||(39138504-39138567)
chr2 (121-197)||(39396572-39396652)
chr2 (3-62)||(39473114-39473173)
chr2 (121-196)||(44895028-44895107)
chr2 (123-197)||(39153243-39153321)
chr2 (48-93)||(44749683-44749728)
chr2 (3-35)||(44624594-44624626)
[»] chr5 (1 HSPs)
chr5 (3-127)||(17060443-17060567)
[»] chr8 (2 HSPs)
chr8 (51-108)||(44730065-44730122)
chr8 (18-65)||(45342788-45342835)
[»] chr6 (1 HSPs)
chr6 (121-194)||(16114549-16114626)


Alignment Details
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 44615203 - 44615327
Alignment:
Q  3 tctaaatatgcagatacatctaacatggatgatcaattcagtataaccattgatggaacaggtgaggaatctgtcattctagattatttgcgagaatcat 102  Q
    |||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| ||| | ||||||  || |||||||||| |||||||||||||||    
T  44615203 tctaaatatgcagatatatctaacatggatgaccaattcagtattaccattgatggcacaagcgaggaaattggcattctagataatttgcgagaatcat 44615302  T
Q  103 cagatccagcaaaacttattttgga 127  Q
    ||||||||||||||||| |||||||    
T  44615303 cagatccagcaaaacttgttttgga 44615327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 44749661 - 44749611
Alignment:
Q  1 tttctaaatatgcagatacatctaacatggatgatcaattcagtataacca 51  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44749661 tttctaaatatgcagatacatctaacatggatgatcaatacagtataacca 44749611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 44624626 - 44624700
Alignment:
Q  53 tgatggaacaggtgaggaatctgtcattctagattatttgcgagaatcatcagatccagcaaaacttattttgga 127  Q
    ||||||| || ||||||||  || |||||| ||| ||||||||||||||||||||||||||||| || |||||||    
T  44624626 tgatggagcaagtgaggaaattgacattcttgataatttgcgagaatcatcagatccagcaaaaattgttttgga 44624700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 39216839 - 39216919
Alignment:
Q  121 ttttggagctttttgcaactgttgc----cacaagagagctgtggaactgtttgggacccaaggttttgcaaataaagttt 197  Q
    ||||||||||||||||| |||||||    ||||||| |||| | |||||||||| |||||  |||||||||||||||||||    
T  39216839 ttttggagctttttgcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagttt 39216919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 44895510 - 44895473
Alignment:
Q  3 tctaaatatgcagatacatctaacatggatgatcaatt 40  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  44895510 tctaaatatgcagttacatctaacatggatgatcaatt 44895473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 39138428 - 39138484
Alignment:
Q  6 aaatatgcagatacatctaacatggatgatcaattcagtataaccattgatggaaca 62  Q
    |||||||||| | ||||||||| |||||||||||| |||  ||||||||||||||||    
T  39138428 aaatatgcagttgcatctaacacggatgatcaattaagtccaaccattgatggaaca 39138484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 39138504 - 39138567
Alignment:
Q  64 gtgaggaatctgtcattctagattatttgcgagaatcatcagatccagcaaaacttattttgga 127  Q
    |||| ||| |||||||||||| | || ||| |||||||||||||||||||||| || |||||||    
T  39138504 gtgatgaaactgtcattctagttaatctgcaagaatcatcagatccagcaaaagttgttttgga 39138567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 39396652 - 39396572
Alignment:
Q  121 ttttggagctttttgcaactgttgc----cacaagagagctgtggaactgtttgggacccaaggttttgcaaataaagttt 197  Q
    ||||||||||||||||| | |||||    ||||||| |||| |||| ||||||| |||||  |||||||||||||||||||    
T  39396652 ttttggagctttttgcatcggttgctcagcacaagacagctatggagctgtttgagaccctgggttttgcaaataaagttt 39396572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 39473173 - 39473114
Alignment:
Q  3 tctaaatatgcagatacatctaacatggatgatcaattcagtataaccattgatggaaca 62  Q
    ||||||||||||| ||||||| |||||||||||||||| |||  ||||| ||||| ||||    
T  39473173 tctaaatatgcagctacatcttacatggatgatcaattaagtccaaccactgatgaaaca 39473114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 44895107 - 44895028
Alignment:
Q  121 ttttggagctttttgcaactgttgc----cacaagagagctgtggaactgtttgggacccaaggttttgcaaataaagtt 196  Q
    |||||||||||||||||  ||||||    ||||||| |||||||||||| ||| ||||||  ||||||||| ||||||||    
T  44895107 ttttggagctttttgcatttgttgctcagcacaagatagctgtggaactttttcggaccctcggttttgcacataaagtt 44895028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 39153243 - 39153321
Alignment:
Q  123 ttggagctttttgcaactgttgc----cacaagagagctgtggaactgtttgggacccaaggttttgcaaataaagttt 197  Q
    |||||||||||||||  ||||||    |||||||  ||||||||||| ||| ||||||  |||||||||||||||||||    
T  39153243 ttggagctttttgcatttgttgctcaacacaagactgctgtggaactatttcggaccctgggttttgcaaataaagttt 39153321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 44749683 - 44749728
Alignment:
Q  48 accattgatggaacaggtgaggaatctgtcattctagattatttgc 93  Q
    |||||||||| |||| || |||||||||||||||||||| ||||||    
T  44749683 accattgatgaaacaagtaaggaatctgtcattctagataatttgc 44749728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 44624594 - 44624626
Alignment:
Q  3 tctaaatatgcagatacatctaacatggatgat 35  Q
    ||||||||||||||||||||| |||||||||||    
T  44624594 tctaaatatgcagatacatcttacatggatgat 44624626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 17060443 - 17060567
Alignment:
Q  3 tctaaatatgcagatacatctaacatggatgatcaattcagtataaccattgatggaacaggtgaggaatctgtcattctagattatttgcgagaatcat 102  Q
    ||||||||||||||||||||| ||||||||||| |||| ||||| |||||||||||| || |||||||||||| |||||||| | |||||| ||||||||    
T  17060443 tctaaatatgcagatacatcttacatggatgatgaattaagtattaccattgatggagcaagtgaggaatctgacattctagttaatttgcaagaatcat 17060542  T
Q  103 cagatccagcaaaacttattttgga 127  Q
    | |||||| ||||| || |||||||    
T  17060543 cggatccatcaaaaattgttttgga 17060567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 44730065 - 44730122
Alignment:
Q  51 attgatggaacaggtgaggaatctgtcattctagattatttgcgagaatcatcagatc 108  Q
    |||||||||||| ||||| |||||| || ||||| |||||||||||||||||| ||||    
T  44730065 attgatggaacaagtgagaaatctgacactctagtttatttgcgagaatcatcggatc 44730122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 45342788 - 45342835
Alignment:
Q  18 acatctaacatggatgatcaattcagtataaccattgatggaacaggt 65  Q
    |||||| |||||||||||||||| ||||  ||||||||||||||||||    
T  45342788 acatcttacatggatgatcaattaagtactaccattgatggaacaggt 45342835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 194
Target Start/End: Original strand, 16114549 - 16114626
Alignment:
Q  121 ttttggagctttttgcaactgttgc----cacaagagagctgtggaactgtttgggacccaaggttttgcaaataaag 194  Q
    ||||||||||||||||| |||||||    ||||||| || | |||| ||||||| |||||  ||||||||||||||||    
T  16114549 ttttggagctttttgcatctgttgctcagcacaagacagttatggagctgtttgagaccctcggttttgcaaataaag 16114626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University