View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15446_low_3 (Length: 484)

Name: NF15446_low_3
Description: NF15446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15446_low_3
NF15446_low_3
[»] chr7 (1 HSPs)
chr7 (242-401)||(47363495-47363658)
[»] chr1 (2 HSPs)
chr1 (199-280)||(4816742-4816823)
chr1 (289-366)||(34711561-34711638)
[»] chr3 (5 HSPs)
chr3 (287-471)||(33508409-33508590)
chr3 (199-280)||(25500985-25501066)
chr3 (358-395)||(1930009-1930046)
chr3 (329-401)||(8690337-8690409)
chr3 (329-401)||(9042206-9042278)
[»] chr5 (2 HSPs)
chr5 (199-252)||(41732461-41732514)
chr5 (211-280)||(43391063-43391132)
[»] chr8 (1 HSPs)
chr8 (197-280)||(22642806-22642889)
[»] chr6 (1 HSPs)
chr6 (358-395)||(1069058-1069095)
[»] chr2 (1 HSPs)
chr2 (358-395)||(29370290-29370327)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 242 - 401
Target Start/End: Complemental strand, 47363658 - 47363495
Alignment:
Q  242 aattttgacactcttgctaggtta----tgggcgacacaatttctttataagtttggaaaatgacacaaaaatgatctacaacgagacataatattacca 337  Q
    ||||||||||||||||||||| ||    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  47363658 aattttgacactcttgctaggctagctatgggcgacacaatttctttataagtttgaaaaatgacacaaaaatgatctacaacgagacataatattatca 47363559  T
Q  338 aattccaactgattattgggcctatcaactatgctatcagccactagcttacaatctaactcaa 401  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||    
T  47363558 aattccaactgattattcggcctatcaactatgctatcagccactagcttagaatctagctcaa 47363495  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 4816823 - 4816742
Alignment:
Q  199 aatacaagatgaaatcaaatcaaagacttgatgatgagcatacaattttgacactcttgctaggttatgggcgacacaattt 280  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||||| | ||||||||||| |||||    
T  4816823 aatataagatgaaatcaaatcaaagacttggtgacgagcatacaattttgactcccttgctaagctatgggcgacataattt 4816742  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 289 - 366
Target Start/End: Original strand, 34711561 - 34711638
Alignment:
Q  289 gtttggaaaatgacacaaaaatgatctacaacgagacataatattaccaaattccaactgattattgggcctatcaac 366  Q
    |||||||| ||||||||| | ||||||||| |||||||||||||||| ||||||| |||||||||||| |||||||||    
T  34711561 gtttggaacatgacacaatagtgatctacatcgagacataatattactaaattccgactgattattggacctatcaac 34711638  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 471
Target Start/End: Complemental strand, 33508590 - 33508409
Alignment:
Q  287 aagtttggaaaatgacacaaaaatgatctacaacgagacataatattaccaaattccaactgattattgggcctatcaactatgctatcagccactagct 386  Q
    |||||| ||||||||||||| | ||||||||| | | ||||||||||| ||||||   || ||||||||| |||||||| |||| || |  | |||| ||    
T  33508590 aagtttagaaaatgacacaatagtgatctacaccaa-acataatattatcaaattttgaccgattattggacctatcaaatatgatacccactactaact 33508492  T
Q  387 tacaatctaactcaatttagcaccttcgataatctcaattgatcaaaaccatgagatggcatcagacaaccccattgcctatgct 471  Q
    ||||||| | |||||||| ||||||| |||| |  ||||||||| || |||| ||||||| |||  ||| |||||||||||||||    
T  33508491 tacaatcaagctcaattt-gcacctttgatagttccaattgatc-aagccataagatggcgtcacgcaagcccattgcctatgct 33508409  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 25501066 - 25500985
Alignment:
Q  199 aatacaagatgaaatcaaatcaaagacttgatgatgagcatacaattttgacactcttgctaggttatgggcgacacaattt 280  Q
    ||||||||||| |||||||| ||||||| | ||| ||||||||||||||||  | |||||||   |||||||||||||||||    
T  25501066 aatacaagatggaatcaaatgaaagactcggtgacgagcatacaattttgatgcccttgctaaactatgggcgacacaattt 25500985  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 1930046 - 1930009
Alignment:
Q  358 cctatcaactatgctatcagccactagcttacaatcta 395  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  1930046 cctatcaactatgctatcaaccactagcttacaatcta 1930009  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 401
Target Start/End: Complemental strand, 8690409 - 8690337
Alignment:
Q  329 atattaccaaattccaactgattattgggcctatcaactatgctatcagccactagcttacaatctaactcaa 401  Q
    ||||||||||| ||   |||| |||| | ||||||||||||||||||| | |||||||||||||||| |||||    
T  8690409 atattaccaaactcagcctgaatattagtcctatcaactatgctatcaactactagcttacaatctagctcaa 8690337  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 401
Target Start/End: Complemental strand, 9042278 - 9042206
Alignment:
Q  329 atattaccaaattccaactgattattgggcctatcaactatgctatcagccactagcttacaatctaactcaa 401  Q
    ||||||||||| ||   |||| |||| | ||||||||||||||||||| | |||||||||||||||| |||||    
T  9042278 atattaccaaactcagcctgaatattagtcctatcaactatgctatcaactactagcttacaatctagctcaa 9042206  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 41732514 - 41732461
Alignment:
Q  199 aatacaagatgaaatcaaatcaaagacttgatgatgagcatacaattttgacac 252  Q
    |||||||||||||||||||||||| ||||||||| |||||| |||| |||||||    
T  41732514 aatacaagatgaaatcaaatcaaaaacttgatgacgagcatgcaatcttgacac 41732461  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 43391063 - 43391132
Alignment:
Q  211 aatcaaatcaaagacttgatgatgagcatacaattttgacactcttgctaggttatgggcgacacaattt 280  Q
    |||||||||||| || ||||||  |||||||| ||||||||| |||||||   ||||||||||| |||||    
T  43391063 aatcaaatcaaaaacatgatgactagcatacagttttgacacccttgctaaagtatgggcgacataattt 43391132  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 280
Target Start/End: Original strand, 22642806 - 22642889
Alignment:
Q  197 taaatacaagatgaaatcaaatcaaagacttgatgatgagcatacaattttgacactcttgctaggttatgggcgacacaattt 280  Q
    |||||||||||||||||||||||||| ||||| |||  ||||||||| || ||| | || |||| |  |||||||||| |||||    
T  22642806 taaatacaagatgaaatcaaatcaaatacttggtgactagcatacaaattcgactccctcgctaagcgatgggcgacataattt 22642889  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 1069058 - 1069095
Alignment:
Q  358 cctatcaactatgctatcagccactagcttacaatcta 395  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  1069058 cctatgaactatgctatcatccactagcttacaatcta 1069095  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 395
Target Start/End: Complemental strand, 29370327 - 29370290
Alignment:
Q  358 cctatcaactatgctatcagccactagcttacaatcta 395  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  29370327 cctatcaattatgctatcaaccactagcttacaatcta 29370290  T

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