View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15446_low_6 (Length: 405)
Name: NF15446_low_6
Description: NF15446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15446_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 35834423 - 35834045
Alignment:
| Q |
1 |
atcttatgacattagttatatgcgtcatctctcatatatatccgacattttttcctattcatagtttatgtgaaactttaccactcatgcttgagcccaa |
100 |
Q |
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| T |
35834423 |
atcttatgacattagttatatgagtcatctctcatatatatccgacattttttcctattcatagtttatgtgaaacttaaccactcatgcttgagcccaa |
35834324 |
T |
|
| Q |
101 |
cattcttcccctcaagcgtaagttctcaattcttatacttgcaaatttgcaatactattattaccaatgaaacacgtctcgtgattacactgctagtaag |
200 |
Q |
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| T |
35834323 |
cattcttcccctcaagcgtaagttctcagttcttatacttgcaa--------taccattattactaatgaaacatgtctcgtgattacactgctattaag |
35834232 |
T |
|
| Q |
201 |
acttgtgatacaaggatccaacaccaggatctacttcgtcccctcacgaagccaaatcatgactttggaaccacccttattgatgagtttcggagaacat |
300 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35834231 |
acttgtgatacaaggatccaacaccaggatcaacttcgtcccctcaccaagccaaatcatgactttggaaccacccttattgatgaatttcggagaacat |
35834132 |
T |
|
| Q |
301 |
cgtaagcaacaacaagtcaatatttcatgatcacaagagagaaatgttacatcttcactcaaaactgaagagcattaggtatcgaat |
387 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35834131 |
cgtaagcaacaacgagccaatatttcatgatcacaagagagaaatgttacatcttcactcaaaactgaagagcattaggtatcgaat |
35834045 |
T |
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