View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15446_low_7 (Length: 399)
Name: NF15446_low_7
Description: NF15446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15446_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 52823366 - 52823118
Alignment:
| Q |
8 |
gattatactgccgcatatttacgatgcttattttgtagttcatttcttttgcttaaacgtttttcatgtgcggtgtagctttcaataatatgttgtttcg |
107 |
Q |
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| T |
52823366 |
gattatactgccgcatatttacgatgcctattttatatttcatttcttttgcttaaatgtttttcatgtgcggtgtagctttcaataatatgttgtttcg |
52823267 |
T |
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| Q |
108 |
nnnnnnnn-tatatgtaaacatttttctgaataaaaaataatcaaggcttcattgtaacacacgttgagtaaaattaataaactaggtcccatgacgaac |
206 |
Q |
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| T |
52823266 |
gaaaaaaaatatacgtaaacatttttctgaataaaaaat---caaggctttattgtaacacacgttgagtaaaattaataaactaggtcccatgacgaac |
52823170 |
T |
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| Q |
207 |
atggatattttgagtgcactatacaaataatgatgcttattaataatgtaaa |
258 |
Q |
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| T |
52823169 |
atggatattttgagtgcactatacaaataatgatgcttattaataatgtaaa |
52823118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 325 - 386
Target Start/End: Complemental strand, 52823063 - 52823002
Alignment:
| Q |
325 |
aaaaagcaaaatgtgtttcaattgaaattaaagtaggatttattttatagtatgattaaagt |
386 |
Q |
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| T |
52823063 |
aaaaagcaaaatgtgtttcaattgaaattaaagtaggatttattttatagtatgattaaagt |
52823002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 745366 - 745454
Alignment:
| Q |
15 |
ctgccgcatatttacgatgcttattttgtagttcatttcttttgcttaaacgtttttcatgtgcggtgtagctttcaataatatgttgt |
103 |
Q |
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| T |
745366 |
ctgccgcatatttatggtgcctattatgtatttcattgcttttgcttagccgctcttcctctgcagtgtagctttcaacaatatgttgt |
745454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 41057121 - 41057161
Alignment:
| Q |
66 |
gtttttcatgtgcggtgtagctttcaataatatgttgtttc |
106 |
Q |
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| T |
41057121 |
gtttttcttgtgcagtgtagctttcaataatatgctgtttc |
41057161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 25664324 - 25664372
Alignment:
| Q |
14 |
actgccgcatatttacgatgcttattttgtagttcatttcttttgctta |
62 |
Q |
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| T |
25664324 |
actgccgcatatttacgatgtctattttgtagttcatttcttttactta |
25664372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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