View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15446_low_8 (Length: 385)

Name: NF15446_low_8
Description: NF15446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15446_low_8
NF15446_low_8
[»] chr8 (6 HSPs)
chr8 (13-182)||(42622657-42622826)
chr8 (224-371)||(42622823-42622970)
chr8 (307-338)||(31916619-31916650)
chr8 (238-278)||(10758336-10758376)
chr8 (236-284)||(16210960-16211008)
chr8 (218-278)||(42043425-42043485)
[»] chr3 (10 HSPs)
chr3 (258-338)||(21367637-21367713)
chr3 (218-278)||(20880407-20880466)
chr3 (218-278)||(30956706-30956766)
chr3 (218-278)||(30972518-30972578)
chr3 (221-278)||(583979-584036)
chr3 (287-336)||(22203425-22203474)
chr3 (292-337)||(39980729-39980774)
chr3 (210-278)||(46778307-46778376)
chr3 (236-284)||(15304421-15304469)
chr3 (236-284)||(44061097-44061145)
[»] chr6 (5 HSPs)
chr6 (218-321)||(24626225-24626324)
chr6 (292-337)||(6536615-6536660)
chr6 (235-279)||(3785873-3785917)
chr6 (236-284)||(9093630-9093678)
chr6 (236-284)||(29274303-29274351)
[»] chr5 (6 HSPs)
chr5 (292-338)||(32703300-32703346)
chr5 (292-338)||(43300878-43300924)
chr5 (236-278)||(35446003-35446045)
chr5 (292-337)||(35445868-35445913)
chr5 (236-284)||(9202822-9202870)
chr5 (294-338)||(36318776-36318820)
[»] chr7 (5 HSPs)
chr7 (239-284)||(30180002-30180047)
chr7 (291-342)||(34744027-34744078)
chr7 (246-337)||(20269534-20269621)
chr7 (237-278)||(8960707-8960748)
chr7 (292-337)||(19022610-19022655)
[»] chr1 (7 HSPs)
chr1 (238-334)||(15687374-15687468)
chr1 (289-338)||(38503489-38503538)
chr1 (299-338)||(27820361-27820400)
chr1 (292-338)||(37842379-37842425)
chr1 (292-337)||(3234040-3234085)
chr1 (302-338)||(24334203-24334239)
chr1 (236-284)||(37841946-37841994)
[»] chr4 (6 HSPs)
chr4 (236-278)||(3155551-3155593)
chr4 (292-338)||(17822889-17822935)
chr4 (217-278)||(19494843-19494904)
chr4 (292-337)||(21731681-21731726)
chr4 (292-336)||(9760440-9760484)
chr4 (239-279)||(49803162-49803202)
[»] chr2 (4 HSPs)
chr2 (218-278)||(41241212-41241272)
chr2 (218-278)||(41407231-41407291)
chr2 (218-278)||(41812170-41812230)
chr2 (218-278)||(45229442-45229502)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 9e-89; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 42622657 - 42622826
Alignment:
Q  13 aaggcacaatagccaaacgacgattgtcctcgtcgttttggtcctgattgtctgaataatcacattgttttgaccacgatagttgatctgtaattaatta 112  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42622657 aaggcacaatagccaaacgacgattgtcctcctcgttttggtcctgattgtctgaataatcacattgttttgaccacgatagttgatctgtaattaatta 42622756  T
Q  113 aaattaaatcaatataaaaatctactcaagataagatgtaaagcatgtttggataaacaacttatgtaag 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42622757 aaattaaatcaatataaaaatctactcaagataagatgtaaagcatgtttggataaacaacttatgtaag 42622826  T

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Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 224 - 371
Target Start/End: Original strand, 42622823 - 42622970
Alignment:
Q  224 taagcttaaacgagctatttcgatagcaaatgataaaatcaagttaaattgttttcctatatttaatgtataagttgtttttctaagctatcttggagaa 323  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42622823 taagtttaaacgagctatttcgatagcaaatgataaaatcaagttaaattgttttcctatatttaatttataagttgtttttctaagctatcttggagaa 42622922  T
Q  324 tttataaaaataagccgaagaaaaatgtcattagttgttcacaaaagt 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42622923 tttataaaaataagccgaagaaaaatgtcattagttgttcacaaaagt 42622970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 338
Target Start/End: Original strand, 31916619 - 31916650
Alignment:
Q  307 taagctatcttggagaatttataaaaataagc 338  Q
    ||||||||||||||||||||||||||||||||    
T  31916619 taagctatcttggagaatttataaaaataagc 31916650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 10758376 - 10758336
Alignment:
Q  238 ctatttcgatagcaaatgataaaatcaagttaaattgtttt 278  Q
    ||||||| ||||||||| ||||||| |||||||||||||||    
T  10758376 ctatttctatagcaaatcataaaataaagttaaattgtttt 10758336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 16211008 - 16210960
Alignment:
Q  236 agctatttcgatagcaaatgataaaatcaagttaaattgttttcctata 284  Q
    ||||||||| |||| |||||||||||| |||||| ||||||||| ||||    
T  16211008 agctatttctatagtaaatgataaaataaagttacattgttttcatata 16210960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 42043485 - 42043425
Alignment:
Q  218 tatgtataagcttaaacgagctatttcgatagcaaatgataaaatcaagttaaattgtttt 278  Q
    |||||||||||||| |   |||||||| |||||||| ||||||||  ||||||||||||||    
T  42043485 tatgtataagcttacatatgctatttctatagcaaaagataaaatgcagttaaattgtttt 42043425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 338
Target Start/End: Original strand, 21367637 - 21367713
Alignment:
Q  258 aaaatcaagttaaattgttttcctatatttaatgtataagttgtttttctaagctatcttggagaatttataaaaataagc 338  Q
    ||||| |||||||||||||||| ||||    ||||||||||||||||  ||||||||||||||||| |||| |||||||||    
T  21367637 aaaataaagttaaattgttttcgtata----atgtataagttgttttcataagctatcttggagaacttatgaaaataagc 21367713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 20880407 - 20880466
Alignment:
Q  218 tatgtataagcttaaacgagctatttcgatagcaaatgataaaatcaagttaaattgtttt 278  Q
    |||||||||||||| |  ||||||||  |||||||||||||||| ||||||||||||||||    
T  20880407 tatgtataagcttacataagctatttttatagcaaatgataaaa-caagttaaattgtttt 20880466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 30956766 - 30956706
Alignment:
Q  218 tatgtataagcttaaacgagctatttcgatagcaaatgataaaatcaagttaaattgtttt 278  Q
    |||| ||||||||| |  ||||||||| |||||||| |||||||| |||||||||||||||    
T  30956766 tatgcataagcttacataagctatttctatagcaaaagataaaataaagttaaattgtttt 30956706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 30972578 - 30972518
Alignment:
Q  218 tatgtataagcttaaacgagctatttcgatagcaaatgataaaatcaagttaaattgtttt 278  Q
    |||| ||||||||| |  ||||||||| |||||||| |||||||| |||||||||||||||    
T  30972578 tatgcataagcttacataagctatttctatagcaaaagataaaataaagttaaattgtttt 30972518  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 583979 - 584036
Alignment:
Q  221 gtataagcttaaacgagctatttcgatagcaaatgataaaatcaagttaaattgtttt 278  Q
    ||||||||||| |  || |||||| |||| |||||||||||| |||||||||||||||    
T  583979 gtataagcttacataagttatttctatagaaaatgataaaataaagttaaattgtttt 584036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 336
Target Start/End: Original strand, 22203425 - 22203474
Alignment:
Q  287 taatgtataagttgtttttctaagctatcttggagaatttataaaaataa 336  Q
    |||| |||||||||||||  ||||||||||||||||| |||| |||||||    
T  22203425 taatctataagttgttttcataagctatcttggagaacttatgaaaataa 22203474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Original strand, 39980729 - 39980774
Alignment:
Q  292 tataagttgtttttctaagctatcttggagaatttataaaaataag 337  Q
    |||||||||||||| |||||||| |||||||| |||| ||||||||    
T  39980729 tataagttgtttttataagctatattggagaacttatgaaaataag 39980774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 278
Target Start/End: Complemental strand, 46778376 - 46778307
Alignment:
Q  210 ataagcgct-atgtataagcttaaacgagctatttcgatagcaaatgataaaatcaagttaaattgtttt 278  Q
    ||||||||| |||||| |||||| |  ||||||||| |||||||  |||||||| |||||||||||||||    
T  46778376 ataagcgcttatgtatcagcttatataagctatttctatagcaagagataaaataaagttaaattgtttt 46778307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 15304469 - 15304421
Alignment:
Q  236 agctatttcgatagcaaatgataaaatcaagttaaattgttttcctata 284  Q
    ||||||||| ||| |||| |||||||| |||||||||||||||| ||||    
T  15304469 agctatttctataacaaaagataaaataaagttaaattgttttcatata 15304421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 44061145 - 44061097
Alignment:
Q  236 agctatttcgatagcaaatgataaaatcaagttaaattgttttcctata 284  Q
    ||||||||| |||||||| |||||||| | ||||||||||||| |||||    
T  44061145 agctatttctatagcaaaagataaaataaggttaaattgtttttctata 44061097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 321
Target Start/End: Original strand, 24626225 - 24626324
Alignment:
Q  218 tatgtataagcttaaacgagctatttcgatagcaaatgataaaatcaagttaaattgttttcctatatttaatgtataagttgtttttctaagctatctt 317  Q
    |||||||||||||| |  ||||||||| |||| ||| |||||||  |||||||||||||||  |||||    | |||||||||||||  |||||||||||    
T  24626225 tatgtataagcttacataagctatttctataggaaaggataaaacaaagttaaattgtttttgtatat----tctataagttgttttcataagctatctt 24626320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Original strand, 6536615 - 6536660
Alignment:
Q  292 tataagttgtttttctaagctatcttggagaatttataaaaataag 337  Q
    ||||||||||||||  ||||||| ||||||||||||| ||||||||    
T  6536615 tataagttgtttttagaagctatattggagaatttatgaaaataag 6536660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 3785917 - 3785873
Alignment:
Q  235 gagctatttcgatagcaaatgataaaatcaagttaaattgttttc 279  Q
    ||||||||||| ||||||| |||||||| |||||||| |||||||    
T  3785917 gagctatttcggtagcaaaagataaaataaagttaaactgttttc 3785873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 9093678 - 9093630
Alignment:
Q  236 agctatttcgatagcaaatgataaaatcaagttaaattgttttcctata 284  Q
    ||||||||| ||| |||| |||||||| |||||||||||||||| ||||    
T  9093678 agctatttctatatcaaaagataaaataaagttaaattgttttcgtata 9093630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 29274351 - 29274303
Alignment:
Q  236 agctatttcgatagcaaatgataaaatcaagttaaattgttttcctata 284  Q
    ||||||||| |||||||| |||||||| |||| ||||||||||| ||||    
T  29274351 agctatttctatagcaaaagataaaataaagtcaaattgttttcatata 29274303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 32703346 - 32703300
Alignment:
Q  292 tataagttgtttttctaagctatcttggagaatttataaaaataagc 338  Q
    |||||||||||||  |||||||||| |||||||||||||||||||||    
T  32703346 tataagttgttttcataagctatctaggagaatttataaaaataagc 32703300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 338
Target Start/End: Original strand, 43300878 - 43300924
Alignment:
Q  292 tataagttgtttttctaagctatcttggagaatttataaaaataagc 338  Q
    |||||||||||||| ||||||||||||||||| |||| |||||||||    
T  43300878 tataagttgtttttgtaagctatcttggagaacttatgaaaataagc 43300924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 35446003 - 35446045
Alignment:
Q  236 agctatttcgatagcaaatgataaaatcaagttaaattgtttt 278  Q
    ||||||||  ||||||||||||||||| |||||||||||||||    
T  35446003 agctatttttatagcaaatgataaaataaagttaaattgtttt 35446045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 35445913 - 35445868
Alignment:
Q  292 tataagttgtttttctaagctatcttggagaatttataaaaataag 337  Q
    |||||| |||| || |||||||||||||||||||||| ||||||||    
T  35445913 tataaggtgttcttgtaagctatcttggagaatttatgaaaataag 35445868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 9202870 - 9202822
Alignment:
Q  236 agctatttcgatagcaaatgataaaatcaagttaaattgttttcctata 284  Q
    |||||||||  ||||||| |||||||| |||||||||||||||| ||||    
T  9202870 agctatttctgtagcaaaagataaaataaagttaaattgttttcatata 9202822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 36318776 - 36318820
Alignment:
Q  294 taagttgtttttctaagctatcttggagaatttataaaaataagc 338  Q
    |||||||||||  ||||||||||||||||||||||  ||||||||    
T  36318776 taagttgttttcataagctatcttggagaatttatgtaaataagc 36318820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 30180002 - 30180047
Alignment:
Q  239 tatttcgatagcaaatgataaaatcaagttaaattgttttcctata 284  Q
    ||||||||||||||| |||||||| |||||||||||||||| ||||    
T  30180002 tatttcgatagcaaaagataaaataaagttaaattgttttcgtata 30180047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 34744027 - 34744078
Alignment:
Q  291 gtataagttgtttttctaagctatcttggagaatttataaaaataagccgaa 342  Q
    ||||||||||||||  |||||||| |||||||| ||||||||||||| ||||    
T  34744027 gtataagttgttttcataagctatattggagaacttataaaaataaggcgaa 34744078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 337
Target Start/End: Original strand, 20269534 - 20269621
Alignment:
Q  246 atagcaaatgataaaatcaagttaaattgttttcctatatttaatgtataagttgtttttctaagctatcttggagaatttataaaaataag 337  Q
    |||||||| |||||||  |||||||||||||||  || || |    ||||||||||||| ||||||| | ||||||||||||| ||||||||    
T  20269534 atagcaaaagataaaacaaagttaaattgtttttgtaaatgt----tataagttgttttactaagctgtattggagaatttatgaaaataag 20269621  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 8960748 - 8960707
Alignment:
Q  237 gctatttcgatagcaaatgataaaatcaagttaaattgtttt 278  Q
    |||||| | ||||||||||||||||| |||||||||||||||    
T  8960748 gctattcctatagcaaatgataaaataaagttaaattgtttt 8960707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 19022655 - 19022610
Alignment:
Q  292 tataagttgtttttctaagctatcttggagaatttataaaaataag 337  Q
    |||||||||||||| |||||||| |||||||| |||| ||||||||    
T  19022655 tataagttgtttttataagctatattggagaacttatgaaaataag 19022610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 334
Target Start/End: Complemental strand, 15687468 - 15687374
Alignment:
Q  238 ctatttcgatagcaaatgataaaatcaagttaaattgttttcctatatttaatgtataagttgtttttctaagctatcttggagaatttataaaaat 334  Q
    ||||||| ||||||||||||||| | |||||||||||||||| | ||  |||  |||||| ||||||  | | ||||||||||||| ||||||||||    
T  15687468 ctatttctatagcaaatgataaagttaagttaaattgttttcgtgta--taagatataagctgttttagttaactatcttggagaacttataaaaat 15687374  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 38503538 - 38503489
Alignment:
Q  289 atgtataagttgtttttctaagctatcttggagaatttataaaaataagc 338  Q
    ||||||||||||||||| | ||||||||||||||| |||| |||||||||    
T  38503538 atgtataagttgtttttgttagctatcttggagaacttatgaaaataagc 38503489  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 27820400 - 27820361
Alignment:
Q  299 tgtttttctaagctatcttggagaatttataaaaataagc 338  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  27820400 tgtttttataagctatcttggagaatttatgaaaataagc 27820361  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 37842425 - 37842379
Alignment:
Q  292 tataagttgtttttctaagctatcttggagaatttataaaaataagc 338  Q
    |||||||||||||  |||||||||||| |||| ||||||||||||||    
T  37842425 tataagttgttttcataagctatcttgaagaacttataaaaataagc 37842379  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 3234085 - 3234040
Alignment:
Q  292 tataagttgtttttctaagctatcttggagaatttataaaaataag 337  Q
    |||||||||||||| |||||||| |||||||| |||| ||||||||    
T  3234085 tataagttgtttttataagctatattggagaacttatgaaaataag 3234040  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 24334203 - 24334239
Alignment:
Q  302 ttttctaagctatcttggagaatttataaaaataagc 338  Q
    |||||||||||||||||||||| || |||||||||||    
T  24334203 ttttctaagctatcttggagaacttgtaaaaataagc 24334239  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 37841946 - 37841994
Alignment:
Q  236 agctatttcgatagcaaatgataaaatcaagttaaattgttttcctata 284  Q
    ||||||| | ||| ||||||||||||| |||||||||||||||| ||||    
T  37841946 agctattcctataacaaatgataaaataaagttaaattgttttcgtata 37841994  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 3155551 - 3155593
Alignment:
Q  236 agctatttcgatagcaaatgataaaatcaagttaaattgtttt 278  Q
    ||||||||| |||||||| |||||||| |||||||||||||||    
T  3155551 agctatttctatagcaaaagataaaataaagttaaattgtttt 3155593  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 17822935 - 17822889
Alignment:
Q  292 tataagttgtttttctaagctatcttggagaatttataaaaataagc 338  Q
    |||||||||||||  ||||||||||||||||| |||| |||||||||    
T  17822935 tataagttgttttcataagctatcttggagaacttatgaaaataagc 17822889  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 19494843 - 19494904
Alignment:
Q  217 ctatgtataagcttaaacgagctatttcgatagcaaatgataaaatcaagttaaattgtttt 278  Q
    ||||||||||| ||| |  ||||| ||| ||||||||||||||||| ||| |||||||||||    
T  19494843 ctatgtataaggttacataagctagttctatagcaaatgataaaataaagctaaattgtttt 19494904  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 21731726 - 21731681
Alignment:
Q  292 tataagttgtttttctaagctatcttggagaatttataaaaataag 337  Q
    |||||||||||||| |||||||| ||||||||||||| ||| ||||    
T  21731726 tataagttgtttttataagctatattggagaatttatgaaagtaag 21731681  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 9760440 - 9760484
Alignment:
Q  292 tataagttgtttttctaagctatcttggagaatttataaaaataa 336  Q
    |||||||||||||| |||||||| |||||||| |||| |||||||    
T  9760440 tataagttgtttttataagctatattggagaacttatgaaaataa 9760484  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 49803162 - 49803202
Alignment:
Q  239 tatttcgatagcaaatgataaaatcaagttaaattgttttc 279  Q
    |||||| |||||||| |||||||| ||||||||||||||||    
T  49803162 tatttctatagcaaaagataaaatgaagttaaattgttttc 49803202  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 41241272 - 41241212
Alignment:
Q  218 tatgtataagcttaaacgagctatttcgatagcaaatgataaaatcaagttaaattgtttt 278  Q
    |||| ||||||||| |  ||||||||| |||| ||| |||||||| |||||||||||||||    
T  41241272 tatggataagcttacataagctatttctataggaaaagataaaatgaagttaaattgtttt 41241212  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 41407231 - 41407291
Alignment:
Q  218 tatgtataagcttaaacgagctatttcgatagcaaatgataaaatcaagttaaattgtttt 278  Q
    |||||||||||||| |  |||||||||  || |||| |||||||| |||||||||||||||    
T  41407231 tatgtataagcttacataagctatttctgtaccaaaagataaaataaagttaaattgtttt 41407291  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 41812230 - 41812170
Alignment:
Q  218 tatgtataagcttaaacgagctatttcgatagcaaatgataaaatcaagttaaattgtttt 278  Q
    |||||||||||||| |  ||||||||  || ||||||| |||||| |||||||||||||||    
T  41812230 tatgtataagcttacataagctatttttatggcaaatggtaaaatgaagttaaattgtttt 41812170  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 45229442 - 45229502
Alignment:
Q  218 tatgtataagcttaaacgagctatttcgatagcaaatgataaaatcaagttaaattgtttt 278  Q
    |||||||||| ||| |  ||||||||| |||||||| |||||||| | |||||||||||||    
T  45229442 tatgtataagtttacataagctatttctatagcaaacgataaaatgaggttaaattgtttt 45229502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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