View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15447_high_10 (Length: 246)
Name: NF15447_high_10
Description: NF15447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15447_high_10 |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 33250499 - 33250711
Alignment:
| Q |
1 |
tgcttctcttcttgcgttattgtgcttttgtgaattgcttttggagatcaatttgattctcgagtaacttg-ttttccagaccgataatttgtatgagtg |
99 |
Q |
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|||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
33250499 |
tgcttcacttcttgcgtgattgtgcttttgtgaattgctcttggagatcaatttgattctcgagtaactcgtttttccagaccgataatttgtatgagtt |
33250598 |
T |
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| Q |
100 |
gttgcggactggtgttaaaggttcaa------ctatttatatgttcctggaagctatttggtggctttggtgcgcaagtaataagttatgtatggagaat |
193 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33250599 |
gttgcggactggtgttaaaggttcaattatttatatttatatgttcctggaagctatttggtggctttggtgcgcaaggaataagttatgtatggagaat |
33250698 |
T |
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| Q |
194 |
gaattggtttcac |
206 |
Q |
| |
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||||||||||||| |
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| T |
33250699 |
gaattggtttcac |
33250711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 33242579 - 33242791
Alignment:
| Q |
1 |
tgcttctcttcttgcgttattgtgcttttgtgaattgcttttggagatcaatttgattctcgagtaacttgtttt-ccagaccgataatttgtatgagtg |
99 |
Q |
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|||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
33242579 |
tgcttcacttcttgtgtgattgtgcttttgtgaattgcttttggagatcaatttgattctcgagtaactcgtttttccagaccgataatttgtatgagtg |
33242678 |
T |
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| Q |
100 |
gttgcggactggtgttaaaggttcaac------tatttatatgttcctggaagctatttggtggctttggtgcgcaagtaataagttatgtatggagaat |
193 |
Q |
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| T |
33242679 |
gttgcggactggtgtcaaaggttcaactatttatatttatatgctcctggaagctatttggtgactttggtgtgcaaggaataatttatgtatggagaat |
33242778 |
T |
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| Q |
194 |
gaattggtttcac |
206 |
Q |
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| T |
33242779 |
gaattggtttcac |
33242791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 206
Target Start/End: Original strand, 44985596 - 44985802
Alignment:
| Q |
2 |
gcttctcttcttgcgttattgtgcttttgtgaattgcttttggagatcaatttgattctcgagtaacttgtttt-ccagaccgataatttgtatgagtgg |
100 |
Q |
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||||| || |||| || ||| ||||| ||||||| |||||| ||||||||| |||||||| |||||| |||| ||||||||||||||||| | ||||| |
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| T |
44985596 |
gcttcactgcttgtgtgattatgcttctgtgaatcacttttgcagatcaattggattctcgggtaactcatttttccagaccgataatttgtgttagtgg |
44985695 |
T |
|
| Q |
101 |
ttgcggact-ggtgttaaaggttcaactatttatatgttcctggaagctatttggtggctttggtgcgcaagtaataagttatgtatggagaatgaattg |
199 |
Q |
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||||||||| || |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| |||||||| |||||||||||||| ||| |
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| T |
44985696 |
ttgcggactcggggttaaaggttcaactatttatatgctcctggtagctgtttggtggctttggtgcgcaaagaataagttgtgtatggagaatgagttg |
44985795 |
T |
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| Q |
200 |
gtttcac |
206 |
Q |
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||||||| |
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| T |
44985796 |
gtttcac |
44985802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 25867198 - 25867078
Alignment:
| Q |
15 |
cgttattgtgcttttgtgaattgcttttggagatcaatttgattctcgagtaac-ttgttttccagaccgataatttgtatgagtggttgcggactggtg |
113 |
Q |
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||||||||||||||||||||| | ||||||||||||||| |||||||| |||| || ||||||| ||| ||||||||||||| |||||| ||||||||| |
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| T |
25867198 |
cgttattgtgcttttgtgaatcgtttttggagatcaattagattctcggataacttttttttccaaaccaataatttgtatgaatggttgtggactggtg |
25867099 |
T |
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| Q |
114 |
ttaaaggttcaactatttata |
134 |
Q |
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|||| |||| ||||||||| |
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| T |
25867098 |
ctaaatcttcatctatttata |
25867078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 40727 - 40632
Alignment:
| Q |
111 |
gtgttaaaggttcaactatttatatgttcctggaagctatttggtggctttggtgcgcaagtaataagttatgtatggagaatgaattggtttcac |
206 |
Q |
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|||| ||||||||| |||||||||||||||| | ||| |||||||||||||| |||| || |||||| | ||| ||||||||||||||||||||| |
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| T |
40727 |
gtgtgaaaggttcatctatttatatgttccttgcggctgtttggtggctttggcgcgctagaaataagctgtgtgtggagaatgaattggtttcac |
40632 |
T |
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