View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15447_high_12 (Length: 236)
Name: NF15447_high_12
Description: NF15447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15447_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 34580315 - 34580533
Alignment:
| Q |
1 |
atgtgccctaataaccatggatcaatgaatcaacatgtaacataatcagatttcacctttcaacccacaaactttatatttattatgctattatgtgtga |
100 |
Q |
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| T |
34580315 |
atgtgccctagtaaccatggatcaatgaatcaacatgtaacataatcagattttacctttcaacccacaaactttatatttattatgctattatgtgtga |
34580414 |
T |
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| Q |
101 |
ttctacataaaataaatcatcacaacacaatacacgtataaacacaaatttcctaacatgaacctagaaatgcaaatctaccttttatcaattagaaact |
200 |
Q |
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| T |
34580415 |
tt-tacataaaataaatcatcacaacacaatacacgtataaacacaaatttcctaacatgaacctagaaatgcaaatctaccttttatcaattagaaact |
34580513 |
T |
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| Q |
201 |
gtcgtttggcgtgaaagaat |
220 |
Q |
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|||||||||||||||||||| |
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| T |
34580514 |
gtcgtttggcgtgaaagaat |
34580533 |
T |
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Back To:
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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 163
Target Start/End: Complemental strand, 29296841 - 29296755
Alignment:
| Q |
77 |
tatttattatgctattatgtgtgattctacataaaataaatcatcacaacacaatacacgtataaaca-caaatttcctaacatgaac |
163 |
Q |
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| T |
29296841 |
tatttgttatgccagtatgtgtggttctatagaaaataaatcatcacaacacaatacacgtgtaaacatcaaatttc-taacatgaac |
29296755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 26530210 - 26530163
Alignment:
| Q |
92 |
tatgtgtgattctacataaaataaatcatcacaacacaatacacgtat |
139 |
Q |
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| T |
26530210 |
tatgtgtgattctacgtaaaataaatcaccgcaacacaatacatgtat |
26530163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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