View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15447_high_2 (Length: 391)
Name: NF15447_high_2
Description: NF15447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15447_high_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 33546849 - 33546473
Alignment:
| Q |
18 |
gttaatgcatattctttatcaagtttttggacaaatatattatatgaaaaagtttggacaaatgttcctctttgcattaattaaatcatcatgttccttg |
117 |
Q |
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| T |
33546849 |
gttaatgcatattctttatcaagtttttggacaaatatattatatgaaaaagtttggacaaatgttcctctttgcatcaattaaatcatcatgttccttg |
33546750 |
T |
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| Q |
118 |
agaagnnnnnnnnatcatacttgaattaatatttgattaaaatgctaatgtgttatttgaacatcaaatcatctaagatgtgctttattttag----nnn |
213 |
Q |
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| T |
33546749 |
agaag-tttttttaccatacttgaattaatatttgattaaaatgttaatgtgttatttgaacatcaaatcatctaagatgtgctttattttagttttttt |
33546651 |
T |
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| Q |
214 |
nnnnnaccatactctattttattggctaaaaattcttacgaatctcatcaaattcatccgtgacttatgatttgacgacattcataaattttaattaatn |
313 |
Q |
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|||||| ||||||||||||||| ||||||| ||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||| |||| |
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| T |
33546650 |
tttttaccatattctattttattggctcaaaattcatacgaatcttatcaaattcacccgtgactcatgatttgacgacattcataaattttaactaata |
33546551 |
T |
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| Q |
314 |
nnnnnnntttcgaaaattatgtattattaaagagggtaatgctagcactttattttaaaaataatatgagatgtggtt |
391 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
33546550 |
aaaaaaatttcgaaaattaagtattattaaagagggtagtgctagcacttcattttaaaaataatatgagatgtggtt |
33546473 |
T |
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