View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15447_high_5 (Length: 355)
Name: NF15447_high_5
Description: NF15447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15447_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 42202886 - 42203124
Alignment:
| Q |
1 |
ggaagaccgagaaagtatgcagcggatggttcggtgacggcagcgttgtctccgaaaccgatatcatcgtcggctccgttgccgccggtgatcgatttca |
100 |
Q |
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| T |
42202886 |
ggaagaccgagaaagtatgcagcggatggttcggtgacggcagcgttgtctccgaaaccgatatcatcgtcggctccgttgccgccggtgatcgatttca |
42202985 |
T |
|
| Q |
101 |
cggcggagaagcgtgcaaaagtgaagccagttagttctgtgagcaaagcgaattttgagttggaaaatataggtactgcttctaactagaatatctctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42202986 |
cggcggagaagcgtgcaaaagtgaagccagttagttctgtgagcaaagcgaattttgagttggaaaatataggtactgcttctaactagaatatctctat |
42203085 |
T |
|
| Q |
201 |
tttgttgtctactttttattttagttttgaaaaaattga |
239 |
Q |
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| T |
42203086 |
tttgttgtctactttttattttatttttgaaaaaattga |
42203124 |
T |
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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 13926582 - 13926508
Alignment:
| Q |
68 |
cgtcggctccgttgccgccggtgatcgatttcacggcggagaagcgtgcaaaagtgaagccagttagttctgtga |
142 |
Q |
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| T |
13926582 |
cgtctgctccgttgccgccggtgatcaatttcatggcggagaagcgtgcaaaagtgaagtcagttagctctgtga |
13926508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 12523826 - 12523892
Alignment:
| Q |
68 |
cgtcggctccgttgccgccggtgatcgatttcacggcggagaagcgtgcaaaagtgaagccagttag |
134 |
Q |
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| T |
12523826 |
cgtctgctccgttgccgccggtgatcaatttcatggcggagaagcgtgcaaaagtgaagccagttag |
12523892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 32060695 - 32060764
Alignment:
| Q |
73 |
gctccgttgccgccggtgatcgatttcacggcggagaagcgtgcaaaagtgaagccagttagttctgtga |
142 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
32060695 |
gctccgttgccgccggtgatcaatttcatggcggagaagcgtgcaaaaatgaagccagttagctctgtga |
32060764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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