View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15447_high_8 (Length: 299)
Name: NF15447_high_8
Description: NF15447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15447_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 54771776 - 54771558
Alignment:
| Q |
22 |
caaatgttaccttagcatcatatgaggatcatcatgctttgagggtaagagctcttccaagataagtgtttgtcgaaaagcatcaactgcctgtaactct |
121 |
Q |
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| T |
54771776 |
caaatgttaccttagcatcatatgaggatcatcatgctttgagggtaagagctcttccaagataagtgtttgtcgaagagcatcaactgcctgtaactct |
54771677 |
T |
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| Q |
122 |
tctgcatcaaaactatcctcaatacagatagacataactctgctgtgcttcctccccttcttggtgaatgaatttttgaacttgctcgaggcactcaatg |
221 |
Q |
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| T |
54771676 |
tctgcatcaaaactatcctcaatacagatagacataactctgctgtgcttcctccccttcttggtgaatgaatttttgaacttgctcgaggcactcaatg |
54771577 |
T |
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| Q |
222 |
ccaccttctttatagaccc |
240 |
Q |
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||||||||||||||||||| |
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| T |
54771576 |
ccaccttctttatagaccc |
54771558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Complemental strand, 54771540 - 54771512
Alignment:
| Q |
258 |
catcctcagaatgttccatctcatgacct |
286 |
Q |
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| T |
54771540 |
catcctcagaatgttccatctcatgacct |
54771512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 26638503 - 26638407
Alignment:
| Q |
29 |
taccttagcatcatatgaggatcatcatgctttgagggtaagagctcttccaagataagtgtttgtcgaaaagcatcaactgcctgtaactcttctg |
125 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||| || ||||| | |||||||| ||| ||||||||||| | |||||| |||||||||| |
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| T |
26638503 |
taccttagcatcatatgatgatcatcatgttttgagggtaatagttcttctaggataagtgcttgacgaaaagcatcgattgcctgcaactcttctg |
26638407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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