View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15447_high_9 (Length: 294)
Name: NF15447_high_9
Description: NF15447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15447_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 33242374 - 33242109
Alignment:
| Q |
8 |
aatatccatctcgtgctgagtaaataccatggagattacctttccatgtatacccatcagtcacgcggggaattcaggcaaatggggggcattttcaagc |
107 |
Q |
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| T |
33242374 |
aatatccatcctctgctgagtaaataccatgaagattacctttccaagtatacccatcagtcacgcggg-agttcaggcaaatggggagaattttcaagc |
33242276 |
T |
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| Q |
108 |
tatctgtagtagaagtagggagagttgtgtagtgatgattaaaattccaagctccattcacgaagacatccttcactcttagattgagagcgtgaatgtc |
207 |
Q |
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|||||||| |||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33242275 |
tatctgtaatagatgcagggagagttgtgtagatatgattaaaattccaagctccattcacgaagacatccttcactcttagattgagatcgtgaatgtc |
33242176 |
T |
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| Q |
208 |
cacgtaaagaaccttttctgttaactttcctatgctagaccaattaacaaaccaaaatgaggagttg |
274 |
Q |
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||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
33242175 |
cacataaagaaccttttctgttaactttcctatcccagaccaattaacaaaccaaaatgaggagttg |
33242109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 33250295 - 33250030
Alignment:
| Q |
8 |
aatatccatctcgtgctgagtaaataccatggagattacctttccatgtatacccatcagtcacgcggggaattcaggcaaatggggggcattttcaagc |
107 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||| | ||||||||||||||| | |||||||||| |
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| T |
33250295 |
aatatccatcctctgctgagtaaataccatgaagattacctttccaagtatacccatcagtcacgcggg-agttcaggcaaatggggagaattttcaagc |
33250197 |
T |
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| Q |
108 |
tatctgtagtagaagtagggagagttgtgtagtgatgattaaaattccaagctccattcacgaagacatccttcactcttagattgagagcgtgaatgtc |
207 |
Q |
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|||||||| |||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33250196 |
tatctgtaatagatgcagggagagttgtgtagatatgattaaaattccaagctccattcacgaagacatccttcactcttagattgagatcgtgaatgtc |
33250097 |
T |
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| Q |
208 |
cacgtaaagaaccttttctgttaactttcctatgctagaccaattaacaaaccaaaatgaggagttg |
274 |
Q |
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||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
33250096 |
cacataaagaaccttttctgttaactttcctatcccagaccaattaacaaaccaaaatgaggagttg |
33250030 |
T |
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