View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15447_low_6 (Length: 343)
Name: NF15447_low_6
Description: NF15447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15447_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 41591318 - 41590993
Alignment:
| Q |
1 |
aatttgtagatcatactccatgctgctttccaacatcaaagatcaactaaacaacccaagcannnnnnnnncatttggaagaaacacaaacatgagagta |
100 |
Q |
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| T |
41591318 |
aatttgtagatcatactccatgctgctttccaacatcaaagatcaactaaacaacccaagcatttttttttcatttggaagaaacacaaacatgagagta |
41591219 |
T |
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| Q |
101 |
aatttaccnnnnnnncccttcaaatcaatatacctctgaaacattttggtacacaaatttaccaaatgaggcctttgtttggaactgtgctgggaagcct |
200 |
Q |
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| T |
41591218 |
aattcacctttttttcccttcaaatcaatatacctctgaaacattttggtacacaagtttaccaaatgaggcctttgtttggaactgttctgggaagcct |
41591119 |
T |
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| Q |
201 |
gatagacgcgtgtttttcggaagcaacaaatgttagcttcttattttcacgtcaaaaggtcttgaggacgcgcaactgcggtgaaaagaagtggaaccaa |
300 |
Q |
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| T |
41591118 |
gatagacgcgtgtttttctgaagcaacaaatgttagcttcttattttcacgtcaaaaggtcttgaggacgcgcgactgcggtgaaaagaagtggaaccaa |
41591019 |
T |
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| Q |
301 |
acactctagacaattagtctcttaat |
326 |
Q |
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| T |
41591018 |
acactctaaacaattagtctcttaat |
41590993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 41584496 - 41584402
Alignment:
| Q |
219 |
ggaagcaacaaatgttagcttcttattttcacgtcaaaaggtcttgaggacgcgcaactgcggtgaaaagaagtggaaccaaacactctagacaa |
313 |
Q |
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| T |
41584496 |
ggaagcaacaaatattaacttctcattttcacatcaaaaggtcttatggacgcgcgattgtggtgaaaagaagtggaaccaaacagtctagacaa |
41584402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41574865 - 41574804
Alignment:
| Q |
1 |
aatttgtagatcatactccatgctgctttccaacatcaaagatcaactaaacaacccaagca |
62 |
Q |
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| T |
41574865 |
aatttgtggatcatactccatgctgctttccaacaccaaagatcaactaaacaacccaagca |
41574804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 41572083 - 41571990
Alignment:
| Q |
219 |
ggaagcaacaaatgttagcttcttattttcacgtcaaaaggtcttgaggacgcgcaactgcggtgaaaagaagtggaaccaaacactctagaca |
312 |
Q |
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| T |
41572083 |
ggaagcaacaaatgttaacttctcattttcaggtcaaaaaatctcatggatgcgcgactgtggtgaaaagaagtggaaccaaacagtctcgaca |
41571990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 304
Target Start/End: Complemental strand, 6981155 - 6981057
Alignment:
| Q |
206 |
acgcgtgtttttcggaagcaacaaatgttagcttcttattttcacgtcaaaaggtcttgaggacgcgcaactgcggtgaaaagaagtggaaccaaacac |
304 |
Q |
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|||| |||||||| ||| ||||||||||||||||| ||| ||| ||||||||| |||| | ||||||| ||||||| |||||| ||||||||||||| |
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| T |
6981155 |
acgcatgtttttccaaagaaacaaatgttagcttctcattatcaagtcaaaaggccttgtgaacgcgcagctgcggtaaaaagatatggaaccaaacac |
6981057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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