View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15447_low_7 (Length: 325)
Name: NF15447_low_7
Description: NF15447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15447_low_7 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 22 - 325
Target Start/End: Original strand, 1459492 - 1459795
Alignment:
| Q |
22 |
ctcagtttcaaaaaattgacaatattaattttcaatggcatgcatcatatcatgatatataccttggatagttttatgtgtagaaactccacatttaaaa |
121 |
Q |
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| T |
1459492 |
ctcagtttcaaaaaattgacaatattaattttcaatggcatgcatcatatcatgatatataccttggatagttttatgtgtagaaactccacatttgaaa |
1459591 |
T |
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| Q |
122 |
gtgcttccatcggaaccccgcaatcacattgaataatatctgctctattcaactttgttaaggttttgcggcatgcgttggaaaagacaagagagacata |
221 |
Q |
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| T |
1459592 |
gtgctttcatccgaaccccgcaatcacattgaataatatctgctctattcaactttgttaaggttttgcggcatgcgttggaaaagagaagagagacata |
1459691 |
T |
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| Q |
222 |
ggatatatcatatagttgaagatcttcaagaactggacatccctctagaagacaatcaagatctccatattgatgaaactcaatgactttcagatgtagg |
321 |
Q |
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| T |
1459692 |
ggatatatcatatagttgaagatcttcaagaactggacatccctctagaagacaatcaagatctccatattgttgaaactcaatgtctttcagatgtagg |
1459791 |
T |
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| Q |
322 |
gttt |
325 |
Q |
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|||| |
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| T |
1459792 |
gttt |
1459795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 84 - 325
Target Start/End: Original strand, 1446151 - 1446392
Alignment:
| Q |
84 |
cttggatagttttatgtgtagaaactccacatttaaaagtgcttccatcggaaccccgcaatcacattgaataatatctgctctattcaactttgttaag |
183 |
Q |
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| T |
1446151 |
cttgtatagttttatgcgtagaaactccacatttgaaagtgctttcatcggaacatcgcaattacattcaataatatctgctctaatcaactttgttaag |
1446250 |
T |
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| Q |
184 |
gttttgcggcatgcgttggaaaagacaagagagacataggatatatcatatagttgaagatcttcaagaactggacatccctctagaagacaatcaagat |
283 |
Q |
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| T |
1446251 |
gtttcacaacatctgttgggatcaagaaaagtgagataggatatatgatatagttgaagatcttcaataactggacaataccctagaagacacttaagat |
1446350 |
T |
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| Q |
284 |
ctccatattgatgaaactcaatgactttcagatgtagggttt |
325 |
Q |
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| T |
1446351 |
ctccatatcgatcaaacttaatgtctttcaaatgtagggttt |
1446392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 12105028 - 12104995
Alignment:
| Q |
154 |
ataatatctgctctattcaactttgttaaggttt |
187 |
Q |
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| T |
12105028 |
ataatatctgctcttttcaactttgttaaggttt |
12104995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 975118 - 975166
Alignment:
| Q |
224 |
atatatcatatagttgaagatcttcaagaactggacatccctctagaag |
272 |
Q |
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| T |
975118 |
atatataacatagttgaagatcttcaagaactggacatccatctagaag |
975166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 974962 - 975064
Alignment:
| Q |
80 |
ataccttggatagttttatgtgtagaaactccacatttaaaagtgcttccatcggaaccccgcaatcacattgaataatatctgctctattcaactttgt |
179 |
Q |
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|||||| ||||||||||||| |||||||||||| |||| |||||| || || ||||| ||| ||||| | | ||||||||||||| ||||| ||| | |
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| T |
974962 |
atacctcggatagttttatgcgtagaaactccaaatttgaaagtgatttcaccggaaaatagcattcacagtcagtaatatctgctctgttcaatttttt |
975061 |
T |
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| Q |
180 |
taa |
182 |
Q |
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||| |
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| T |
975062 |
taa |
975064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 409710 - 409673
Alignment:
| Q |
235 |
agttgaagatcttcaagaactggacatccctctagaag |
272 |
Q |
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| T |
409710 |
agttgaagatcttgaagaactggacatccatctagaag |
409673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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