View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15447_low_8 (Length: 320)
Name: NF15447_low_8
Description: NF15447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15447_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 8840144 - 8839855
Alignment:
| Q |
18 |
tctttttcatcatgaatcatcaacattttcttaagcttcgaaattcgatgcacagattcaagcaaccatttatctttctccataatctcttcccattttc |
117 |
Q |
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| T |
8840144 |
tctttttcatcatgaatcatcaacattttcttaagcttcgaaattcgatgcacagattcaagcaaccatttatctttctccataatctcttcccattttc |
8840045 |
T |
|
| Q |
118 |
ctttccgttctccagtttcattcttcaccatattctcctccacctgatccaaaaacttctctatgtaaccaggaatctcaaacgacactccttctttctc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8840044 |
ctttccgttctccagtttcattcttcaccatattctcctccacctgatccaaaaacttctctatgtaaccaggaatctcaaacgacactccttctttctc |
8839945 |
T |
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| Q |
218 |
atgaagaagaaaatgatcaatgtcttctgaaaccttctcacagataggaggagacttcacagcctcaatggtttctgcatttccttcctt |
307 |
Q |
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| T |
8839944 |
atgcagaagaaaatgatcaatgtcttctgaaaccttctcacagatagggggagacttcacagcctcaatggtttctgcatttccttcctt |
8839855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 10627062 - 10627094
Alignment:
| Q |
224 |
aagaaaatgatcaatgtcttctgaaaccttctc |
256 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
10627062 |
aagaaattgatcaatgtcttctgaaaccttctc |
10627094 |
T |
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