View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15448_high_1 (Length: 576)
Name: NF15448_high_1
Description: NF15448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15448_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 15 - 562
Target Start/End: Original strand, 13084952 - 13085491
Alignment:
| Q |
15 |
gaacctaattggtttcagcaaggacgagctccaccttccacttataaagtaagtaatgatgtgaatgttgtatggcaaagaaccacttccattaatgaaa |
114 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13084952 |
gaaccttattggtttcaacaaggacgagctccaccttccacttataaagtaagcaatgatgtgaatggtgtatggcaaagaaccacttccattaatgaaa |
13085051 |
T |
|
| Q |
115 |
ttggattctatccagcagatgctcaacctcaacaagtcttccnnnnnnnnnnn-gtaaattatttcggactttccaaatagatcacacagttgaattcta |
213 |
Q |
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| T |
13085052 |
ttggattctatcgagtagatgctcaacctcaacaagtcttccaaaaaaaaaaaagtaaattatttcggactttccaaatagatcacacagttgcatgcta |
13085151 |
T |
|
| Q |
214 |
gaccaaaaggaaacctagcctatacctcctccttgcctttaagaatacaaacacctgaaacagcaccaccaaattacctgacaagacccactcccaacct |
313 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13085152 |
gaccaaaaggaaacctagcctataccgcctctttgcctttaagaatacaaacacctgaaacaacaccaccaaattacctgacaagacccactcccaacct |
13085251 |
T |
|
| Q |
314 |
aaccgcatgcaaatatcgtaccaaactctcgccacaactcaacatgacacaaataaagatccaccggctccaaccctttccacatatcccacaccaacac |
413 |
Q |
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| T |
13085252 |
aaccgcctgcaaatatcgtaccaaactctcgccacaactcaacatgacacaaataaagatccaccggctccaaccctttccacatatcccacaccaac-- |
13085349 |
T |
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| Q |
414 |
tatatgaatcaactataacctaacgattgaaaaaattctgacgcgaagggaccttatatatgagaaagttcctaaaaaagacctacagtatataggggtc |
513 |
Q |
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| T |
13085350 |
-------attaactataacctaacgattgaaaaaattatgacgcgaagggaccttatatatgagaaatttcctagaaaagacctgcagtatttaggggtc |
13085442 |
T |
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| Q |
514 |
ccaactcttcatcaattatttatattctgatttcacttgatacaaaaat |
562 |
Q |
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| T |
13085443 |
ccaactcttcatcaattatttatattctgatttcacttgatacaaaaat |
13085491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 285 - 562
Target Start/End: Original strand, 13013846 - 13014114
Alignment:
| Q |
285 |
aattacctgacaagacccactcccaacctaaccgcatgcaaatatcgtaccaaactctcgccacaactcaacatgacacaaataaagatccaccggctcc |
384 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13013846 |
aattacctgacaagacccactcccaacctaaccgcctgcaaatatcgtaccaaactctcgccacaactcaacatgacacaaataaagatccaccggctcc |
13013945 |
T |
|
| Q |
385 |
aaccctttccacatatcccacaccaacactatatgaatcaactataacctaacgattgaaaaaattctgacgcgaagggaccttatatatgagaaagttc |
484 |
Q |
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| T |
13013946 |
aaccctttccacatatcccacaccaacact---------aactataacctaacaattgaaaaaattatgacgcgaagggaccttatatatgagaaacttc |
13014036 |
T |
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| Q |
485 |
ctaaaaaagacctacagtatataggggtcccaactcttcatcaattatttatattctgatttcacttgatacaaaaat |
562 |
Q |
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||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13014037 |
ctagaaaagacctgcagtatataggggtcccaacccttcatcaattatttatattctgatttcacttgatacaaaaat |
13014114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 13013796 - 13013847
Alignment:
| Q |
15 |
gaacctaattggtttcagcaaggacgagctccaccttccacttataaagtaa |
66 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13013796 |
gaaccttattggtttcaacaaggacgagctccaccttccacttataaagtaa |
13013847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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