View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15448_high_3 (Length: 441)
Name: NF15448_high_3
Description: NF15448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15448_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 48953033 - 48953467
Alignment:
| Q |
1 |
tctatcaagcccttcttcgggaaatataatgcgccgaagtacaccattcaattcacatagtaacaagagttatatctgtgcatcaaaaagagacccattt |
100 |
Q |
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| T |
48953033 |
tctatcaagcccttcttcgggaaatataatgcgccgaagtacaccattcaattcacataataacaagagttttatctgtgcatcaaaaagagacccattt |
48953132 |
T |
|
| Q |
101 |
ggccaacaatatgatggcgagttggtggatgagaacatgatcattcttagaatgcgaatccgtgagattgagatggtggaaacaaagactaaagatcatt |
200 |
Q |
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| T |
48953133 |
ggccaacaatatgatggcaagttggtggatgagaacatgatcattcttagaatgcgaatccgtgagattgagatggtggaaacaaagactaaagatcatt |
48953232 |
T |
|
| Q |
201 |
ctgattggactgaatgggagaagaagtattttgagaattatggttcggatgtatgtgatgcagttggattgttgcaaagaatgttgatgaacactagacc |
300 |
Q |
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| T |
48953233 |
ctgattggactgaatgggagaagaagtattttgagaattatggttcggatgtatgtgatgcagttggattgttgcaaagaatgttgatgaacactagacc |
48953332 |
T |
|
| Q |
301 |
tgccttggttgtgggcatattagctctgtttatgctaagcatgtcaatgtccatgtcactacttatgattcatctcgtggatttggcaaatacctcaatg |
400 |
Q |
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| T |
48953333 |
tgccttggctgtgggcatattagctctgtttatgctaagcatgtcaatgtccatgtcactacttatgattcatctcgtggagttggcaaatacctcaatg |
48953432 |
T |
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| Q |
401 |
ataactttttcatcaatataatttggaaccaacca |
435 |
Q |
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| T |
48953433 |
ataactttttcatcaatctaatttggaaccaacca |
48953467 |
T |
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