View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15448_high_8 (Length: 381)
Name: NF15448_high_8
Description: NF15448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15448_high_8 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 7023783 - 7023421
Alignment:
| Q |
19 |
tgccctattttcatattccttgctaggctttcccatatggctttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacaccttcag |
118 |
Q |
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| T |
7023783 |
tgccctattttgatattccttgctaggctttcccatatggctttatctttcccacaaagatacttacctaaagttgtaagaacttgtggaacaccttcag |
7023684 |
T |
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| Q |
119 |
caagatcgaccatcctctccgatagctcacggtactccatttcattatgcttatgtttagcaaaggcatgcaaattgaaaagcagaagtgattcaacaga |
218 |
Q |
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| T |
7023683 |
caagatcgaccatcctctccgatagctcacggtactccatttcattatgcttatgtttagcaaaggcatgcaaattgaaaagcagaagtgattcaacaga |
7023584 |
T |
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| Q |
219 |
gtccaatggttgaacctcgtatgtatcatttgtttttccaacaagtacttccctaactcccgtagttattatgattcgacttcctggtccaaaccaatca |
318 |
Q |
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| T |
7023583 |
gtccaatggttgaaccttgtatgtatcatttgtttttccaacaagtacttccgtaactcccgtagttattatgattcgacttcctggtccaaaccaatca |
7023484 |
T |
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| Q |
319 |
agtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaacc |
381 |
Q |
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| T |
7023483 |
agtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaacc |
7023421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 23 - 381
Target Start/End: Complemental strand, 7031168 - 7030810
Alignment:
| Q |
23 |
ctattttcatattccttgctaggctttcccatatggctttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacaccttcagcaag |
122 |
Q |
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| T |
7031168 |
ctattttcagaatctttgcctggctttcccatatgtccttatctttcccacaaagaaggttagctaaagctttaagaactagtggaacacctgcggtata |
7031069 |
T |
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| Q |
123 |
atcgaccatcctctccgatagctcacggtactccatttcattatgcttatgtttagcaaaggcatgcaaattgaaaagcagaagtgattcaacagagtcc |
222 |
Q |
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| T |
7031068 |
atcgaccatcttctttgatagctcatagtactccatttcgagatgctcatgtttagtaaaggcgtgcaaattgaaaagctgaaaagattcagcagagtcc |
7030969 |
T |
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| Q |
223 |
aatggttgaacctcgtatgtatcatttgtttttccaacaagtacttccctaactcccgtagttattatgattcgacttcctggtccaaaccaatcaagtg |
322 |
Q |
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| T |
7030968 |
aatggctcaacctcgtatatatcatcaacttttccagcaagtacttgcttatctctagtagttatgatgattctacttcttggtcctaaccaatcaactg |
7030869 |
T |
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| Q |
323 |
ttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaacc |
381 |
Q |
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| T |
7030868 |
ttccaatcaaaacttctagttgctctgcatctttgatatcgtcaagaacaataagaacc |
7030810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 23 - 381
Target Start/End: Complemental strand, 7036877 - 7036519
Alignment:
| Q |
23 |
ctattttcatattccttgctaggctttcccatatggctttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacaccttcagcaag |
122 |
Q |
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| T |
7036877 |
ctattttaagattccttgattgggtttcccatatggctttatctttcccacgaagaaggttagctaaagctttaagaaccagtggaacacctgcggtata |
7036778 |
T |
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| Q |
123 |
atcgaccatcctctccgatagctcacggtactccatttcattatgcttatgtttagcaaaggcatgcaaattgaaaagcagaagtgattcaacagagtcc |
222 |
Q |
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| T |
7036777 |
atcaaccatattctttgatagctaatagtactccatttcgagatgctcatgtttagtaaaggcgtaaaaattgaaaagctgaaaagattcagcagagtcc |
7036678 |
T |
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| Q |
223 |
aatggttgaacctcgtatgtatcatttgtttttccaacaagtacttccctaactcccgtagttattatgattcgacttcctggtccaaaccaatcaagtg |
322 |
Q |
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| T |
7036677 |
aatggctcaacctcgtatatatcatcaaattttccagcaagtacttgtttatctctagtagttatgatgattctacttcctggtcctaaccaatcaacta |
7036578 |
T |
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| Q |
323 |
ttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaacc |
381 |
Q |
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| T |
7036577 |
ttccaatcaaaacttctagttgctctgcatctttaacatcatcaagaacaataagaacc |
7036519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 23 - 381
Target Start/End: Original strand, 7075085 - 7075443
Alignment:
| Q |
23 |
ctattttcatattccttgctaggctttcccatatggctttatctttcccacaaagatacttagctaaagttgtaagaacttgtggaacaccttcagcaag |
122 |
Q |
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||||||| | |||||||| | |||||||||||||||||||||||||||||| |||| |||||||||| | ||||||| ||||||||||| | | | |
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| T |
7075085 |
ctattttaagattccttgattggctttcccatatggctttatctttcccacgaagaaggttagctaaagctttaagaaccagtggaacacctgcggtata |
7075184 |
T |
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| Q |
123 |
atcgaccatcctctccgatagctcacggtactccatttcattatgcttatgtttagcaaaggcatgcaaattgaaaagcagaagtgattcaacagagtcc |
222 |
Q |
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||| ||||| ||| ||||||| | ||||||||||||| |||||| |||||| |||||||||||| ||||||||| ||| |||||| |||||||| |
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| T |
7075185 |
atccaccattttctttgatagcttatagtactccatttcaagatgcttttgtttattaaaggcatgcaagttgaaaagctgaaaagattcagcagagtcc |
7075284 |
T |
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| Q |
223 |
aatggttgaacctcgtatgtatcatttgtttttccaacaagtacttccctaactcccgtagttattatgattcgacttcctggtccaaaccaatcaagtg |
322 |
Q |
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| T |
7075285 |
aatggctcaacttcatatatatcatcaacttttccagaaagtacttgtttatctctagcagttatgatgattctacttcctggtcctaaccaatcaactg |
7075384 |
T |
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| Q |
323 |
ttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaacc |
381 |
Q |
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| T |
7075385 |
ttccaaccaaaacttctagttgttccgcatctttgacatcatcaagaacaataagaacc |
7075443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 289 - 381
Target Start/End: Original strand, 7081406 - 7081498
Alignment:
| Q |
289 |
atgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaacc |
381 |
Q |
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||||||| ||| |||| ||||||||||||||||||||||| |||| ||||||||| | || ||| |||||||| |||||||||| ||||||| |
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| T |
7081406 |
atgattctactacctgttccaaaccaatcaagtgttccaattaaaatttctaattgttgtggatccttgacatcgtcaagaacaacaagaacc |
7081498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 381
Target Start/End: Original strand, 7068845 - 7068943
Alignment:
| Q |
283 |
gttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaacc |
381 |
Q |
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| T |
7068845 |
gttatgatgattctactaccttttccaaaccaatcaagtgttccaattaaaatatctagttgctcttgatcactcacatcgtcaagaacaacaagaacc |
7068943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 381
Target Start/End: Original strand, 7092786 - 7092884
Alignment:
| Q |
283 |
gttattatgattcgacttcctggtccaaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaacc |
381 |
Q |
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| T |
7092786 |
gttataatgattctactatctgttcctaaccaatcaagtgttccaattaaagtttctacttgtcgtgaatcattgacatcgtcaagaacaataagaacc |
7092884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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