View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15448_high_9 (Length: 312)
Name: NF15448_high_9
Description: NF15448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15448_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 4953467 - 4953746
Alignment:
| Q |
11 |
caaaggtccttgcaatgaagtccaaaaatctgagagtttaggcaccatgttactatcctataaaattttatgaggttgaatgtcacaatgaaaaatggta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4953467 |
caaaggtccttgcaatgaagtccaaaaatctgagagtttaggcaccatgttactatccaataaaattttatgaggttgaatgtcacaatgaaaaatggta |
4953566 |
T |
|
| Q |
111 |
cattttgttcctgtgtgaagatagtgtactccacatgctgctccaatgcaaatttttagcctttgtttccatgtaagaggttcaattttcatgccactat |
210 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4953567 |
cgttttgttcctgtgtgaagatagtgtactccacatgctgctccaatgcaaatttttagcctttgtttccatgtaagaggttcaattttcatgccactat |
4953666 |
T |
|
| Q |
211 |
tatgtacacaacaaagatgattatagagagaaccattggaattataatcatacacaataatcttctcatctttatggtcacaat |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4953667 |
tatgtacacaacaaagatgattatagagagaaccattggaattataatcat----aataatcttctcatctttatggtcacaat |
4953746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University