View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15448_low_1 (Length: 972)
Name: NF15448_low_1
Description: NF15448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15448_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 885; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 885; E-Value: 0
Query Start/End: Original strand, 8 - 956
Target Start/End: Original strand, 11901800 - 11902748
Alignment:
| Q |
8 |
tcatcatgatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgtt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11901800 |
tcatcatgatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgtt |
11901899 |
T |
|
| Q |
108 |
ctagatgcgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtgg |
207 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11901900 |
ctagatgcgatatttccaaccggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtga |
11901999 |
T |
|
| Q |
208 |
caatgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatcc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11902000 |
caatgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatcc |
11902099 |
T |
|
| Q |
308 |
aagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11902100 |
aagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagcttagtgatggaactaggtagcttttctatgttgt |
11902199 |
T |
|
| Q |
408 |
tatgggaaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcagggactt |
507 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11902200 |
tatgagaaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgtagggactt |
11902299 |
T |
|
| Q |
508 |
gaaggtgttgaagatcttatcgcatgttgatgctgtcatcttcacctcgtgtggaagccgagggttgttagtgctgtacggcaaaagaatggttctcagt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11902300 |
gaaggtgttgaagatcttatcgcatgttgatgttgtcatcttcacctcgtgtggaaggcgagggttgttagtgctgtacggcaaaagaatggttctcagt |
11902399 |
T |
|
| Q |
608 |
ttctttgctttatcgaacaacgattctgggatcccacatgacagatccaaagcaaaatcaaatgaagctcgcaacattccacctgtaactttatccccca |
707 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11902400 |
ttctttgctttatcgaacaacaagtctgggatcccacatgacagatccaaagcaaaatcaaatgaagctcgcaacattccacctttaactttatccccca |
11902499 |
T |
|
| Q |
708 |
tcgaattcacagtcatgttttcttcagaggtgactagccttgcgagtttatgcattaaccgattcattctatataagtgactacttacaacaccatcttc |
807 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
11902500 |
tcgaattcacagtcatgttttcttcacaggtgactagccttgcgagtttatgcattaaccgattcattctatatgagtgattacttacaacaccttcttc |
11902599 |
T |
|
| Q |
808 |
tttttcttccacttgttggaaaaccaacggaacaaagtcattgaaataaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccag |
907 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11902600 |
tttttcttccacttgttggaaaaccaacggaacaaagtcattgaaacaaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccag |
11902699 |
T |
|
| Q |
908 |
agttcaattaatctctcagcatcaatcaaataatctcttggaaacaatg |
956 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11902700 |
agttcaattaatctctcagcatcaatcaaataatctcttggaaacaatg |
11902748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 780
Target Start/End: Complemental strand, 11860751 - 11859979
Alignment:
| Q |
11 |
tcatgatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttcta |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| |||||||||| ||| ||||||| |||||||||||| |||||||||||| |||||||||| | |
|
|
| T |
11860751 |
tcatgatcccatcttagagtcaagaactcgaggtgttgcttatttttcaaaaaatcatctttagcagcttcctttgatggagagaacttgacttgttcaa |
11860652 |
T |
|
| Q |
111 |
gatgcgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtggcaa |
210 |
Q |
| |
|
|||| || ||||| || ||||||||||||||||||||||| |||||| |||||||||||| |||| |||||||||||||||| || || |||| ||| |
|
|
| T |
11860651 |
gatgagaaatttccaagtggcctctcagattgttaagatctgtgagtgatcttagtcctcccgtga---cttgtttcttgctggctacgaaaagtgacaa |
11860555 |
T |
|
| Q |
211 |
tgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaag |
310 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||| | ||||||||| ||||||||||||| | |||| | |
|
|
| T |
11860554 |
tgtttgcaaagaagtaagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatgattgaggcaactcaaatcgtccatg |
11860455 |
T |
|
| Q |
311 |
tcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttat |
410 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || | |||||||||||||||||||||||| ||||| ||| ||||||| ||||| ||||||||||||| |
|
|
| T |
11860454 |
tcttttggcaattccttgaggacatgacattgagacagtttcaatgtttgcaagtggataagatttgttatgcaactaggaagcttctctatgttgttat |
11860355 |
T |
|
| Q |
411 |
gggaaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcag---ggactt |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| | |||||| |||| |||||||| ||||||||||||| ||| || || | |||| |
|
|
| T |
11860354 |
gggaaagatctagatacctcaagtacttcacatcctcaatagagctcggaaccgtcttgatccccaaatcatgtagatccaacacgcgtagcgagcactt |
11860255 |
T |
|
| Q |
508 |
gaaggtgttgaagatcttatcgcatgttgatgctgtcatcttcacctcgtgtggaagccgagggttgttagtgctgtacggcaaaagaatggttctcagt |
607 |
Q |
| |
|
|||||||| |||||||||||| || ||||||| ||||| ||| ||||||| |||||||||||||||||| || |||| |||||||||| ||| || ||| |
|
|
| T |
11860254 |
gaaggtgtcgaagatcttatcacaagttgatgttgtcacctttacctcgtacggaagccgagggttgttaatgttgtatggcaaaagaaaggtccttagt |
11860155 |
T |
|
| Q |
608 |
ttctttgctttatcgaacaacgattctgggatcccacatgacagatccaaagcaaaatcaaatgaagctcgcaacattccacctgtaactttatccccca |
707 |
Q |
| |
|
||||||||||| | |||| | | || |||||| ||||||| ||||| ||||||||||| || ||| |||||| ||||||| || ||| | ||||||| |
|
|
| T |
11860154 |
ttctttgctttctgaaacaccaaatcagggatctcacatgaaagatctaaagcaaaatcgaacgaaactcgcagcattccatcttgaaccctttccccca |
11860055 |
T |
|
| Q |
708 |
tcgaattcacagtcatgttttctt---cagaggtgactagccttgcgagtttatgcattaaccgattcattctata |
780 |
Q |
| |
|
|| || ||| || |||||||| | ||| | | || ||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
11860054 |
tcacatccacggtgatgttttcgttaccagcgatttcttgccttgcgagtttatgcatcaacggattcattctata |
11859979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 8 - 785
Target Start/End: Complemental strand, 11828619 - 11827839
Alignment:
| Q |
8 |
tcatcatgatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgtt |
107 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||||||| || |||||||||||| ||| ||||| |
|
|
| T |
11828619 |
tcatcgtgatcccatcttagagtcaagaactcaaggtgttgtttatttttcaaaaaatcatctttagcagcttcttttgatggagagaacttgatttgtt |
11828520 |
T |
|
| Q |
108 |
ctagatgcgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtgg |
207 |
Q |
| |
|
| |||||| ||||| || ||||| ||||||||||||||||| |||||| |||||||||||| |||| |||||||||||||||| || || |||| |
|
|
| T |
11828519 |
ccagatgcataatttccaagtggcccctcagattgttaagatctgtgagtgatcttagtcctcccgtga---cttgtttcttgctggctacgaaaagtga |
11828423 |
T |
|
| Q |
208 |
caatgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatcc |
307 |
Q |
| |
|
||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||| |||||| || | |||||||||||| |||||||||| ||||| |
|
|
| T |
11828422 |
caatgtttgcaaagaagtgagcttacttattccacttggcatttgagttagatccaagcatccatctaagtcaagatggttaaggcaactcaaatcatcc |
11828323 |
T |
|
| Q |
308 |
aagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgt |
407 |
Q |
| |
|
| ||||||||||||||| ||||||| |||||| | || | |||||| ||||||||||||||||| ||||| ||| ||||||| ||||| || ||||||| |
|
|
| T |
11828322 |
atgtcttttggcaattctttgaggacatgacatcgagacagtttcaacgtttgcaagtggataagatttgttatgcaactaggaagcttctccatgttgt |
11828223 |
T |
|
| Q |
408 |
tatgggaaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcag---gga |
504 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||| ||| || || | | |
|
|
| T |
11828222 |
tatgtgaaagatctagatacctcaagtacttcacatcctcaatagagcttggaactgtcttgatccccaagtcatgtagatccaacacgcgtagcgagta |
11828123 |
T |
|
| Q |
505 |
cttgaaggtgttgaagatcttatcgcatgttgatgctgtcatcttcacctcgtgtggaagccgagggttgttagtgctgtacggcaaaagaatggttctc |
604 |
Q |
| |
|
||||||||||| |||||||||||| || ||||| | ||||||||| |||||||| ||||| |||||||||||| || |||| |||||||||||||| || |
|
|
| T |
11828122 |
cttgaaggtgtcgaagatcttatcacaagttgacgttgtcatctttacctcgtgcggaagacgagggttgttaatgttgtatggcaaaagaatggtcctt |
11828023 |
T |
|
| Q |
605 |
agtttctttgctttatcgaacaacgattctgggatcccacatgacagatccaaagcaaaatcaaatgaagctcgcaacattccacctgtaactttatccc |
704 |
Q |
| |
|
|||||||||||| | | |||| ||| || |||||| ||||||| ||||| |||||||||| || ||| |||||| | | || || |||| | |||| |
|
|
| T |
11828022 |
agtttctttgctgtctgaaacaccgaatcagggatctcacatgaaagatctaaagcaaaattgaacgaaactcgcagcgtcccgccacgaactctctccc |
11827923 |
T |
|
| Q |
705 |
ccatcgaattcacagtcatgttttctt---cagaggtgactagccttgcgagtttatgcattaaccgattcattctatataagt |
785 |
Q |
| |
|
||||| || ||| || |||||||| | ||| | || | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11827922 |
ccatcacatccacggtgatgttttcgtcaccagcaatttcttgtcttgcgagtttatgcattaaccgattcattctatataagt |
11827839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 785
Target Start/End: Complemental strand, 12039516 - 12038739
Alignment:
| Q |
11 |
tcatgatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatgacttgttcta |
110 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||| || ||| ||||||| ||||||||||| |||| |||||| ||| | |||||| |||||||||| | |
|
|
| T |
12039516 |
tcatgatcccatcttagagtcaagaacccaaggtattttttgtttttcaaaaattcatctttagcaatttccttggattgcgagaacttgacttgttcca |
12039417 |
T |
|
| Q |
111 |
gatgcgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaagagtggcaa |
210 |
Q |
| |
|
||||||| ||||| | || |||||||| ||||| ||||| |||||||||||||||||||| || | | | ||||||||| || |||||||||| ||| |
|
|
| T |
12039416 |
gatgcgaaatttccatgtgacctctcagtttgttgagatcggtgagttctcttagtcctcctgtaa---cgtatttcttgctagctacaaagagtgacaa |
12039320 |
T |
|
| Q |
211 |
tgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcaggccatccaag |
310 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||| | |
|
|
| T |
12039319 |
tgtttgtaaagaagtgagcttatttatcccacttggcatttgagttagatccaagcatccctctaagtcaagatggttgaggcaactcaaatcatccatg |
12039220 |
T |
|
| Q |
311 |
tcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttctatgttgttat |
410 |
Q |
| |
|
|||||||||||||||||||| | |||||||| || | |||||| ||||||||||||||||| |||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
12039219 |
tcttttggcaattccttgagaaaatgacattgagaaagtttcaacgtttgcaagtggataagagttgtgatgcaactaggaagcttctctatgttgttat |
12039120 |
T |
|
| Q |
411 |
gggaaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcagggacttgaa |
510 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||| | |||| | |||| |||||||||||||| | ||| | ||| |||| | ||||| |
|
|
| T |
12039119 |
gagaaagatctagatacctcaagtacttcacctcttcaatagagctcggaatcgtcttgatccccaagtcatgcatatctaacacgcgcatagctttgaa |
12039020 |
T |
|
| Q |
511 |
ggtgttgaagatcttatcgcatgttgatgctgtcatcttcacctcgtgtggaagccgagggttgttagtgctgtacggcaaaagaatggttctcagtttc |
610 |
Q |
| |
|
|||||| ||||||||||| || ||||||| |||||||| ||||||| |||||||||||||||| |||| |||| |||||||||||||| |||||||| |
|
|
| T |
12039019 |
ggtgttaaagatcttatcacaggttgatgttgtcatctgtacctcgtcaggaagccgagggttgtcagtgttgtatggcaaaagaatggtcctcagtttt |
12038920 |
T |
|
| Q |
611 |
tttgctttatcgaacaacgattctgggatcccacatgacagatccaaagcaaaatcaaatgaagctcgcaacattccacctgtaactttatcccccatcg |
710 |
Q |
| |
|
|| ||||| || |||| | |||||||||||||| ||| ||| |||||| ||||||| ||| |||| | ||||||| | ||| |||||||||| |
|
|
| T |
12038919 |
ttagctttctcaaacacacaatctgggatcccacacaacaaatctaaagcataatcaaacgaaactcgtagcattccatcgtgaacaccctcccccatcg |
12038820 |
T |
|
| Q |
711 |
aattcacagtcatgttttc------ttcagaggtgactagccttgcgagtttatgcattaaccgattcattctatataagt |
785 |
Q |
| |
|
||| ||| || |||||||| || ||||||||||||||| ||||||||||||||| | || ||||||||||||| |
|
|
| T |
12038819 |
aatccacggtgatgttttcacgactgtcgatggtgactagccttgcaagtttatgcattaacgggtttattctatataagt |
12038739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 2 - 780
Target Start/End: Complemental strand, 11732408 - 11731630
Alignment:
| Q |
2 |
tcatcatcatcatgatcccatcttagagtcaaaaactcaaggtgttgtttatttttcagaaattcatcttgagcagcttccttagatggagagaacatga |
101 |
Q |
| |
|
||||||||||| | |||||||||||||||||| || || ||||||||||||||||| ||||||||||| ||| ||||| || |||||||||||| ||| |
|
|
| T |
11732408 |
tcatcatcatcgcggtcccatcttagagtcaaatgctgaatgtgttgtttatttttcacaaattcatctttagccgcttcgttggatggagagaacttga |
11732309 |
T |
|
| Q |
102 |
cttgttctagatgcgatatttctaactggcctctcagattgttaagatccgtgagttctcttagtcctccagtgattacttgtttcttgctggccacaaa |
201 |
Q |
| |
|
|||| || |||||| | ||||| | | | | | || ||||| |||| |||||||| ||||||||||| ||| | ||||||||||||||||| || |
|
|
| T |
11732308 |
cttgctccagatgcaaaatttccagtttgtccttgaggttgttgagatttgtgagttcccttagtcctccggtgtcagcatgtttcttgctggccacgaa |
11732209 |
T |
|
| Q |
202 |
gagtggcaatgtttgtaaagaagtgagcttatttataccacttggcatgtgagttagatccaggcatccctcaatgtcaagatggttgaggcaactcagg |
301 |
Q |
| |
|
|||| |||||||||||| |||||||| |||| ||| || ||||||||||||||||||||| ||| |||||||||| ||||||| |||||| | |||| |
|
|
| T |
11732208 |
aagtgacaatgtttgtaaggaagtgagtttatctatcccggttggcatgtgagttagatccaagcaaccctcaatgttaagatggctgaggcgagtcaga |
11732109 |
T |
|
| Q |
302 |
ccatccaagtcttttggcaattccttgaggatgtgacattgtgataatttcaatgtttgcaagtggataagctttgtgatggaactaggtagcttttcta |
401 |
Q |
| |
|
| | |||||||||||||||||||||||||| ||||| | || | |||||| |||||||| |||||||||||||||||| ||||||| ||||| |||| |
|
|
| T |
11732108 |
tccttcaagtcttttggcaattccttgaggacatgacagtaggagagtttcaaggtttgcaaatggataagctttgtgatgcaactaggaagcttctcta |
11732009 |
T |
|
| Q |
402 |
tgttgttatgggaaagatctagatacctcaagtacttcacctcctcaatagatgttggaaccatcttaatccccaagtcatgtagatccagcacacgcag |
501 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||| |||| |||||||||||| ||||| || ||||| |||||||||||||||||||||| ||| ||| |
|
|
| T |
11732008 |
tgttgttgtgggatagatctagaaacctcaagtatttcatctcctcaatagaggttggtacaatcttgatccccaagtcatgtagatccaacacgtgcat |
11731909 |
T |
|
| Q |
502 |
ggacttgaaggtgttgaagatcttatcgcatgttgatgctgtcatcttcacctcgtgtggaagccgagggttgttagtg---ctgtacggcaaaagaatg |
598 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| | |||||||||||||||||||||||||||||||||||| || |||| ||||| | |||| |
|
|
| T |
11731908 |
ggacttgaaggtgttgaagatcttatcacaggttggcgtcgtcatcttcacctcgtgtggaagccgagggttgttaatgtttttgtatggcaataaaatg |
11731809 |
T |
|
| Q |
599 |
gttctcagtttctttgctttatcgaacaacgattctgggatcccacatgacagatccaaagcaaaatcaaatgaagctcgcaacattccacctgtaactt |
698 |
Q |
| |
|
|| ||||||||||||||| || |||| ||| ||||| |||||||| || ||||||||| |||||||||| |||||||||| |||||| || ||||| |
|
|
| T |
11731808 |
gtcctcagtttctttgctata---aacatcgaatctggaatcccacacgaaagatccaaaccaaaatcaaacgaagctcgcagcattccttcttcaactt |
11731712 |
T |
|
| Q |
699 |
tatcccccatcgaattcacagtcatgttttcttcagaggtgactagccttgcgagtttatgcattaaccgattcattctata |
780 |
Q |
| |
|
| || ||| | |||| ||||| |||||||| || | |||| ||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
11731711 |
tttctccctttgaatctacagtgatgttttcgccactagccactaaccttgtgagtttatgcatgaacctgttcattctata |
11731630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 811 - 956
Target Start/End: Complemental strand, 11859921 - 11859776
Alignment:
| Q |
811 |
ttcttccacttgttggaaaaccaacggaacaaagtcattgaaataaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagt |
910 |
Q |
| |
|
||||||| |||| ||||||||||| ||||||||||| |||||| ||| | ||| ||||||||||| |||| || | ||||| |||||||| ||||||||| |
|
|
| T |
11859921 |
ttcttccgcttgatggaaaaccaaaggaacaaagtctttgaaacaagcttgaccaaattgttgttctggattgataagaaacccttcagccgtccagagt |
11859822 |
T |
|
| Q |
911 |
tcaattaatctctcagcatcaatcaaataatctcttggaaacaatg |
956 |
Q |
| |
|
| ||| |||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
11859821 |
tgaatcaatctctctgcatcaatcaaataatcttctggaaacaatg |
11859776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 811 - 956
Target Start/End: Complemental strand, 11827786 - 11827641
Alignment:
| Q |
811 |
ttcttccacttgttggaaaaccaacggaacaaagtcattgaaataaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagt |
910 |
Q |
| |
|
||||||| |||| ||||||||||| ||||||||||| | |||| ||| ||| ||||||||||| |||| || | ||||| |||||| ||||||||||| |
|
|
| T |
11827786 |
ttcttccgcttgatggaaaaccaaaggaacaaagtcttcgaaacaagcatgaccaaattgttgttctggattgataagaaacccttcaccagtccagagt |
11827687 |
T |
|
| Q |
911 |
tcaattaatctctcagcatcaatcaaataatctcttggaaacaatg |
956 |
Q |
| |
|
| ||| |||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
11827686 |
tgaatcaatctctctgcatcaatcaaataatcttctggaaacaatg |
11827641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 811 - 956
Target Start/End: Complemental strand, 12038695 - 12038535
Alignment:
| Q |
811 |
ttcttccacttgttggaaaaccaacggaacaaagtcattgaaataaggtcgacaaaattgttgttgtggaatggtg---------------agaaatcct |
895 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||| |||||| ||| ||||| ||||||||||| |||| || || ||||||||| |
|
|
| T |
12038695 |
ttcttccacttgatgaaaaaccaaaggaacaaagtcgttgaaacaagctcgaccaaattgttgttctggattgttgtttgaggaaattgttagaaatcct |
12038596 |
T |
|
| Q |
896 |
tcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatg |
956 |
Q |
| |
|
||||| ||||| |||| |||||||||||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
12038595 |
tcagccgtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatg |
12038535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 884 - 956
Target Start/End: Complemental strand, 11731517 - 11731445
Alignment:
| Q |
884 |
gtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttggaaacaatg |
956 |
Q |
| |
|
|||| ||||||||||||| ||| |||| |||||||||||| ||||||||||||| || | ||||||||||| |
|
|
| T |
11731517 |
gtgataaatccttcagcaaaccaaagttgaattaatctctcggcatcaatcaaatgatgttctggaaacaatg |
11731445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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