View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15448_low_14 (Length: 285)
Name: NF15448_low_14
Description: NF15448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15448_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 55 - 243
Target Start/End: Complemental strand, 15619505 - 15619317
Alignment:
| Q |
55 |
ttagtctaaagagttgggatgtttgtattatgcatctttatttgtaatctctttagttttttcatgtgttgtgttttgcaatttccagtataaatatatg |
154 |
Q |
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| T |
15619505 |
ttagtctaaagacttgggatgtttgtattatgtatctttatttgtaatctctttagttttttcttgtgttgtgttttgtactttccagtagaaatatatg |
15619406 |
T |
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| Q |
155 |
atggatcaaatgatttgcgttaagttgataattcaaatataaattggaagactaaaatttagtatccgattttctcagctgctttggta |
243 |
Q |
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| T |
15619405 |
atggatcaagtgatttgcgttaagttgataattgaaatataaattggaagactaaaatttagtatccgattttctcagctgctttggta |
15619317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 55 - 251
Target Start/End: Complemental strand, 15654068 - 15653872
Alignment:
| Q |
55 |
ttagtctaaagagttgggatgtttgtattatgcatctttatttgtaatctctttagttttttcatgtgttgtgttttgcaatttccagtataaatatatg |
154 |
Q |
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| T |
15654068 |
ttagtctaaagacttgggatgtttgtattatgtatctttatttgtaatctctttagttttttcctatgttgtgttttgtaatttccagtagaaatatatg |
15653969 |
T |
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| Q |
155 |
atggatcaaatgatttgcgttaagttgataattcaaatataaattggaagactaaaatttagtatccgattttctcagctgctttggtacaacttca |
251 |
Q |
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| T |
15653968 |
atggatcaagtgatttgcgttaagttgataattgaaatataaattggaagactaaaatttagtatccgaatttctcagctgctttggtacagcttca |
15653872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 55 - 249
Target Start/End: Complemental strand, 27536192 - 27535998
Alignment:
| Q |
55 |
ttagtctaaagagttgggatgtttgtattatgcatctttatttgtaatctctttagttttttcatgtgttgtgttttgcaatttccagtataaatatatg |
154 |
Q |
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| T |
27536192 |
ttagtctaaagacttgggatgtttgtattatgtatctttatttgtaatctctttagttttttcctgtgttgtgttttgtaatttccagtagaaatatatg |
27536093 |
T |
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| Q |
155 |
atggatcaaatgatttgcgttaagttgataattcaaatataaattggaagactaaaatttagtatccgattttctcagctgctttggtacaactt |
249 |
Q |
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| T |
27536092 |
atggatcaagtgatttgcgttaagttgataattgaaatataaattggaagattataatttagtatccgattttctcagctgctttggtaaaactt |
27535998 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 55 - 243
Target Start/End: Complemental strand, 15642722 - 15642534
Alignment:
| Q |
55 |
ttagtctaaagagttgggatgtttgtattatgcatctttatttgtaatctctttagttttttcatgtgttgtgttttgcaatttccagtataaatatatg |
154 |
Q |
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|||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||| | ||||||||| ||||||||| |
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| T |
15642722 |
ttagtctaaagacttgggatgtttgtattatgtatatttatttgtaatctctttagttttttcttgtgttgtgttttgtactttccagtagaaatatatg |
15642623 |
T |
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| Q |
155 |
atggatcaaatgatttgcgttaagttgataattcaaatataaattggaagactaaaatttagtatccgattttctcagctgctttggta |
243 |
Q |
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| T |
15642622 |
atggatcaagtgatttgcgttaagttgataattgaaatataaattggaagactaaaatttagtatccgattttctcagctgctttggta |
15642534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 55 - 251
Target Start/End: Complemental strand, 22003388 - 22003189
Alignment:
| Q |
55 |
ttagtctaaagagttgggatgtttgtattatgcatctttatttgtaatctctttagttttttcatgtgttgtgttttgcaatttccagtataaatatatg |
154 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| |
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| T |
22003388 |
ttagtctaaagacttgggatgtttgtattatgcatctttatttgcaatctctttagttttttcctgtgttgtgttttgtaatttccagtagaaatatatg |
22003289 |
T |
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| Q |
155 |
atggatcaa---atgatttgcgttaagttgataattcaaatataaattggaagactaaaatttagtatccgattttctcagctgctttggtacaacttca |
251 |
Q |
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| T |
22003288 |
atggatcaagtgatcatttgcgttaagttgataattgaaatataaattggaagactaaaatttagtatccgattttctcagctgctttggtacagcttca |
22003189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 23483284 - 23483166
Alignment:
| Q |
123 |
ttgtgttttgcaatttccagtataaatatatgatggatcaaatgatttgcgttaagttgataattcaaatataaattggaagactaaaatttagtatccg |
222 |
Q |
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||||||||| |||||||||||| ||||||||||||||||| |||| || || |||||||||| ||||||||||||||||| |||||||||||||| | |
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| T |
23483284 |
ttgtgtttttcaatttccagtagcaatatatgatggatcaagtgat--gcatttagttgataatcgaaatataaattggaagagtaaaatttagtatctg |
23483187 |
T |
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| Q |
223 |
attttctcagctgctttggta |
243 |
Q |
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||||||||||||||||||||| |
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| T |
23483186 |
attttctcagctgctttggta |
23483166 |
T |
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