View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15448_low_18 (Length: 254)
Name: NF15448_low_18
Description: NF15448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15448_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 40343809 - 40343589
Alignment:
| Q |
19 |
acaccagcattttttctttctttcattaattctttggtgaataacgttgtata---taaaaggggttcatgtcggtttaggataacacacgtttagcaga |
115 |
Q |
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| T |
40343809 |
acaccagcattttttctttctttcatt----ctttggtgaataacgttgtatagtataaaaggggttcatgtcagtttaggataacacaagtttagcaga |
40343714 |
T |
|
| Q |
116 |
atgacggtgaaactacatggattttggtatagtccttttactttaagggttgtatggaccttaaatttgaagggtataccatatgagaacatagaggaag |
215 |
Q |
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| T |
40343713 |
atgacggtgaaactacatggattttggtatagtccttttactttaagggttgtatggaccttaaatttgaagggtataccatatgagaacatagaggaat |
40343614 |
T |
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| Q |
216 |
atcgtttcaataaaagtcctatgct |
240 |
Q |
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|||| ||||||||||||||| |||| |
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| T |
40343613 |
atcgcttcaataaaagtcctctgct |
40343589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 69 - 228
Target Start/End: Complemental strand, 40338579 - 40338417
Alignment:
| Q |
69 |
atataaaaggggttcatgtcggtttaggataacacacgtttagcagaatgac---ggtgaaactacatggattttggtatagtccttttactttaagggt |
165 |
Q |
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| T |
40338579 |
atataaaaggggttactgttggattgggaaaacacaagcttaggagaatggcagaggtgaaactacatggattttggtatagtccttttactttaagggt |
40338480 |
T |
|
| Q |
166 |
tgtatggaccttaaatttgaagggtataccatatgagaacatagaggaagatcgtttcaataa |
228 |
Q |
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| T |
40338479 |
tgtatggaccctaaatttgaaaggtataccatatgagaacatagaggaagatcgtttcaataa |
40338417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 40326178 - 40326059
Alignment:
| Q |
121 |
ggtgaaactacatggattttggtatagtccttttactttaagggttgtatggaccttaaatttgaagggtataccatatgagaacatagaggaagatcgt |
220 |
Q |
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|||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |
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| T |
40326178 |
ggtgaaactacacggattttggtatagtccttatactttgagggtagtatggaccttgaatctaaagggtataccatatgagaacatagaggaagatcgt |
40326079 |
T |
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| Q |
221 |
ttcaataaaagtcctatgct |
240 |
Q |
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||||||||||||||| |||| |
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| T |
40326078 |
ttcaataaaagtcctctgct |
40326059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 40331391 - 40331289
Alignment:
| Q |
125 |
aaactacatggattttggtatagtccttttactttaagggttgtatggaccttaaatttgaagggtataccatatgagaacatagaggaagatcgtttca |
224 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||| ||||| | ||||| ||||||| |||| |
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| T |
40331391 |
aaactacatggatcttggtatagtcctttcactttaagggtggtatggaccctaaatctgaagggtataccgtatgatagtatagaagaagatcacttca |
40331292 |
T |
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| Q |
225 |
ata |
227 |
Q |
| |
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||| |
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|
| T |
40331291 |
ata |
40331289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 235
Target Start/End: Original strand, 22039572 - 22039678
Alignment:
| Q |
129 |
tacatggattttggtatagtccttttactttaagggttgtatggaccttaaatttgaagggtataccatatgagaacatagaggaagatcgtttcaataa |
228 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||| |||| | || | || |||||||||||||||||||||||||||||||||||||| || |
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| T |
22039572 |
tacatggattttggtacagtccttttactttaagggtagtattgacccttaagctaaaaggtataccatatgagaacatagaggaagatcgtttcaacaa |
22039671 |
T |
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| Q |
229 |
aagtcct |
235 |
Q |
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|||||| |
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|
| T |
22039672 |
gagtcct |
22039678 |
T |
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