View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15448_low_23 (Length: 223)

Name: NF15448_low_23
Description: NF15448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15448_low_23
NF15448_low_23
[»] chr6 (5 HSPs)
chr6 (1-199)||(5884327-5884526)
chr6 (1-49)||(5886224-5886272)
chr6 (1-37)||(5831228-5831264)
chr6 (1-37)||(5854169-5854205)
chr6 (191-223)||(16735855-16735887)
[»] scaffold0922 (1 HSPs)
scaffold0922 (190-223)||(123-156)
[»] chr4 (4 HSPs)
chr4 (190-223)||(29548470-29548503)
chr4 (191-223)||(14578730-14578762)
chr4 (187-223)||(17262375-17262411)
chr4 (191-223)||(24415064-24415096)
[»] scaffold0087 (1 HSPs)
scaffold0087 (1-37)||(35297-35333)
[»] scaffold0005 (1 HSPs)
scaffold0005 (191-223)||(238613-238645)
[»] chr5 (1 HSPs)
chr5 (191-223)||(19849833-19849865)
[»] chr3 (1 HSPs)
chr3 (191-223)||(44895938-44895970)
[»] chr1 (1 HSPs)
chr1 (191-223)||(45885239-45885271)


Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 5884327 - 5884526
Alignment:
Q  1 catgaatgattggatccatgtcactctagcagtttttatgaagaggttgnnnnnnn-tatttcaagtccaagactaacaggtaaatgcattattaatata 99  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  5884327 catgaatgattggatccatgtcacactggcagtttttatgaagaggttgaaaaaaaatatttcaagtccaagactaacaggtaaatgcattattaatata 5884426  T
Q  100 ccttcaatatagtgtattattgcaaatgcatgcttgttgtttgaaaaagtaaatttccttataatttccgcacacatagttgaaatgattgtatttttta 199  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5884427 ccttctatatagtgtatcattacaaatgcatgcttgttgtttgaaaaagtaaatttccttataatttccgcacacatagttgaaatgattgtatttttta 5884526  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5886224 - 5886272
Alignment:
Q  1 catgaatgattggatccatgtcactctagcagtttttatgaagaggttg 49  Q
    |||||||||||||||||||||||| |||||||||| | |||| ||||||    
T  5886224 catgaatgattggatccatgtcacactagcagtttctgtgaataggttg 5886272  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5831228 - 5831264
Alignment:
Q  1 catgaatgattggatccatgtcactctagcagttttt 37  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  5831228 catgaaagattggatctatgtcactctagcagttttt 5831264  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5854169 - 5854205
Alignment:
Q  1 catgaatgattggatccatgtcactctagcagttttt 37  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  5854169 catgaatgattggatccatatcacactagcagttttt 5854205  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 16735887 - 16735855
Alignment:
Q  191 tattttttaggcttaattgcacttttagacccc 223  Q
    |||||||||||||||||||||||||| ||||||    
T  16735887 tattttttaggcttaattgcacttttggacccc 16735855  T

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Target: scaffold0922 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 156 - 123
Alignment:
Q  190 gtattttttaggcttaattgcacttttagacccc 223  Q
    ||||||||||||||||||||||||||| ||||||    
T  156 gtattttttaggcttaattgcacttttggacccc 123  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 29548503 - 29548470
Alignment:
Q  190 gtattttttaggcttaattgcacttttagacccc 223  Q
    ||||||||||||||||||||||||||| ||||||    
T  29548503 gtattttttaggcttaattgcacttttggacccc 29548470  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 14578762 - 14578730
Alignment:
Q  191 tattttttaggcttaattgcacttttagacccc 223  Q
    |||||||||||||||||||||||||| ||||||    
T  14578762 tattttttaggcttaattgcacttttggacccc 14578730  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 17262411 - 17262375
Alignment:
Q  187 attgtattttttaggcttaattgcacttttagacccc 223  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  17262411 attgtatttttttggcttaattgcacttttggacccc 17262375  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 24415064 - 24415096
Alignment:
Q  191 tattttttaggcttaattgcacttttagacccc 223  Q
    |||||||||||||||||||||||||| ||||||    
T  24415064 tattttttaggcttaattgcacttttggacccc 24415096  T

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Target: scaffold0087 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35297 - 35333
Alignment:
Q  1 catgaatgattggatccatgtcactctagcagttttt 37  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  35297 catgaaagattggatctatgtcactctagcagttttt 35333  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 238613 - 238645
Alignment:
Q  191 tattttttaggcttaattgcacttttagacccc 223  Q
    |||||||||||||||||||||||||| ||||||    
T  238613 tattttttaggcttaattgcacttttggacccc 238645  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 19849865 - 19849833
Alignment:
Q  191 tattttttaggcttaattgcacttttagacccc 223  Q
    |||||||||||||||||||||||||| ||||||    
T  19849865 tattttttaggcttaattgcacttttggacccc 19849833  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 44895970 - 44895938
Alignment:
Q  191 tattttttaggcttaattgcacttttagacccc 223  Q
    |||||||||||||||||||||||||| ||||||    
T  44895970 tattttttaggcttaattgcacttttggacccc 44895938  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 45885271 - 45885239
Alignment:
Q  191 tattttttaggcttaattgcacttttagacccc 223  Q
    |||||||||||||||||||||||||| ||||||    
T  45885271 tattttttaggcttaattgcacttttggacccc 45885239  T

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