View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15448_low_5 (Length: 455)
Name: NF15448_low_5
Description: NF15448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15448_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 112 - 445
Target Start/End: Complemental strand, 33594399 - 33594069
Alignment:
| Q |
112 |
acatgaggatgaagaaattaagacccatcaagtcaccagagctgtttcaaaatttccattaatttcatatccaatcattcacattcccatgccttaaatc |
211 |
Q |
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| T |
33594399 |
acatgatgatgaagaaattaagacccatcaagtcaccagagctgtttcacaatttccattaatttcatatccaatcattcacattcccatgccttaaatc |
33594300 |
T |
|
| Q |
212 |
tacaccccttctatcatcatcaatcaaataaaaatagtacatgtcttagatcatatacaaatcttaaatgaagcaaattattttcctccacatgtacata |
311 |
Q |
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| T |
33594299 |
gacacccctact---atcatcaatcaaataaaaatagtacaagtctcagatc--atacaaatcttaaatgaagcaaattattttcctccacatgtacata |
33594205 |
T |
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| Q |
312 |
caaataagataacagtaacttgctnnnnnnntagataacagtaacaaaaa--taatatcatgtcatatcatatatacactataattttgtatgtggaaaa |
409 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33594204 |
caaataagataacagtaacttgctaaaaaaatagataacagtaacaaaaaataaatatcatgtcatatcatatatacactataattttgtatgtggaaaa |
33594105 |
T |
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| Q |
410 |
caccatagaaaagggataacaagtttgtcgtctctg |
445 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
33594104 |
caccatagaaaagggataacaagtttgtcgtctctg |
33594069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 33596632 - 33596525
Alignment:
| Q |
7 |
ggacatcatcactttcatccacatgtagagtaatatagcaaagattcaataatatcccacaaccgatggaattacagataaattggtgttggcataaggt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33596632 |
ggacatcatcactttcatccacatgtagagtaatatagcaaaaattcaataatatcccacaaccgatggaattacagataaattggtgttggcataaggt |
33596533 |
T |
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| Q |
107 |
agtccaca |
114 |
Q |
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|||||||| |
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| T |
33596532 |
agtccaca |
33596525 |
T |
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