View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15448_low_9 (Length: 425)
Name: NF15448_low_9
Description: NF15448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15448_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 6300489 - 6300097
Alignment:
| Q |
16 |
atcagtcttggtatagtatctaaacttagtatcatatactaaccatagcaaaaacagtatttatcatattggtagtcacatagtgcttctcaagagggtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6300489 |
atcagtcttggtatagtatctaaacttagtatcatatactaaccatagcaaaaacagtatttatcatattggtagtcacatagtgcttctcaagagggtt |
6300390 |
T |
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| Q |
116 |
ttgcaagctgcaaaactgagttagtgttaatatgaaaaagaattctggtacctctcagaaactaggttcattcctaagtccaaaggaaccaaactacaga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6300389 |
ttgcaagctgcaaaactgagttagtgttaatatgaaaaagaattctggtccctctcagaaactaggttcattcctaagtccaaaggaaccaaattacaga |
6300290 |
T |
|
| Q |
216 |
gnnnnnnncattgaaaaccaaaaagggtggaactcagaaagagtattgttgcatccaacaacaagcagcaatatcagaagacaagcctatgtagctggcg |
315 |
Q |
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| T |
6300289 |
gaaaaaaacattgaaaaccaaaaagggtggaactcagaaagagtattgttgcatccaacaacaagcagcaatatcagaagacaagcctatgtagctggcg |
6300190 |
T |
|
| Q |
316 |
tttcacccttcaacagtggaagaacaataccttctaaatgggatgatgcagagagatggatttgtagtccagtttcatcttcaggctatgttc |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6300189 |
tttcacccttcaacagtggaagaacaataccttctaaatgggatgatgcagagagatggatttgtagtccagtttcatcttcaggctatgttc |
6300097 |
T |
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