View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_high_13 (Length: 489)
Name: NF15449_high_13
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 365
Target Start/End: Complemental strand, 2487876 - 2487525
Alignment:
| Q |
15 |
aatatgagaatattattggattctcttgcttcaaac-gctgtggatcaccgtgggttttaccaaaccgatgtaggagacaaggccaacaagctttatggt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2487876 |
aatatgagaatattattggattctcttgcttcaaaccgctgtggatcaccgtgggttttaccaaaccgatgtaggagacaaggccgacaagctttatggt |
2487777 |
T |
|
| Q |
114 |
acaaaattttgtagaggggctaaaaattgttttgattgtgctcttaattctaccagagttgcctcaagtgattgttctatgaagtacttcttgagttagc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2487776 |
acaaaattttgtagaggggctaaaaattgttttgattgtgctcttaattctaccagagttgcctcaagtgattgttctatgaagtacttcttgagttagc |
2487677 |
T |
|
| Q |
214 |
tttaaagcctatatagaagtttatttcaaccgtaaaacatttatttaaaagactcaaaatcactgcaagttcattttaacttttctctaaccataaattc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2487676 |
tttaaagcctatatagaagtttatttcaaccgtaaaacttttatttaaaagactcaaaatcactgcaagttcattttaacttttctctaaccataaattc |
2487577 |
T |
|
| Q |
314 |
tttgttgaaaattttatttaaactagctctgggatgttgtaagactaatatt |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2487576 |
tttgttgaaaattttatttaaactagctctgggatgttgtaaaactaatatt |
2487525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 2495998 - 2495893
Alignment:
| Q |
27 |
ttattggattctcttgcttcaaacgctgtggatcaccgtgggttttaccaaaccgatgtaggagacaaggccaacaagctttatggtacaaaattttgta |
126 |
Q |
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||||||||||||||||||||||||| || ||| || ||| |||||||||||| ||||||| | ||| | |||| |||||||||||||| ||| |||| |
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| T |
2495998 |
ttattggattctcttgcttcaaacgtcgttgatagccatggattttaccaaaccattgtaggaaaaaagcctaacaggctttatggtacaatattatgta |
2495899 |
T |
|
| Q |
127 |
gagggg |
132 |
Q |
| |
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|||||| |
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|
| T |
2495898 |
gagggg |
2495893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 433 - 473
Target Start/End: Complemental strand, 2487523 - 2487483
Alignment:
| Q |
433 |
tttgttcagttattgagcaacaacgacgtttaacaataaat |
473 |
Q |
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| T |
2487523 |
tttgttcagttattgagcaacaacgacgtttaacaataaat |
2487483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 130
Target Start/End: Complemental strand, 2489587 - 2489484
Alignment:
| Q |
27 |
ttattggattctcttgcttcaaacgctgtggatcaccgtgggttttaccaaaccgatgtaggagacaaggccaacaagctttatggtacaaaattttgta |
126 |
Q |
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||||||||||||||||||||||| | || ||||||| || |||||||||||| ||||||||| || ||| || | |||||||| ||| ||| |||| |
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|
| T |
2489587 |
ttattggattctcttgcttcaaatgtggttgatcaccaaggattttaccaaaccactgtaggagaaaactccagcagggtttatggttcaatattatgta |
2489488 |
T |
|
| Q |
127 |
gagg |
130 |
Q |
| |
|
|||| |
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|
| T |
2489487 |
gagg |
2489484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 2492868 - 2492815
Alignment:
| Q |
27 |
ttattggattctcttgcttcaaacgctgtggatcaccgtgggttttaccaaacc |
80 |
Q |
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|||||| |||||||||||||||||| || ||||||| ||| |||||||||||| |
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|
| T |
2492868 |
ttattgaattctcttgcttcaaacgtggttgatcaccatggattttaccaaacc |
2492815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 26779566 - 26779629
Alignment:
| Q |
132 |
gctaaaaattgttttgattgtgctcttaattctaccagagttgcctcaagtgattgttctatga |
195 |
Q |
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|||||||| ||||| ||||||||||||||||| |||| ||| |||||||||||||| ||||||| |
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| T |
26779566 |
gctaaaaactgtttcgattgtgctcttaattcaaccaaagtagcctcaagtgattgctctatga |
26779629 |
T |
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