View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_high_17 (Length: 437)
Name: NF15449_high_17
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Original strand, 41740333 - 41740736
Alignment:
| Q |
19 |
catgataccacttctgaaccctatccctaatcttctgcaacaacctagcactcaaactcctctctttcctcatcatatccataatctccaaatgaaccgt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41740333 |
catgataccacttctgaaccctatccctaatcttctgcaacaacctagcactcaaactcctctctttcctcatcatatccataatctccaaatgaaccgt |
41740432 |
T |
|
| Q |
119 |
atttggcaaaatacacggcctcgccttctccatcctcctcttatactccctctcctgactcaaatactgtttcatcctctccttctcagtcatatcagaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41740433 |
atttggcaaaatacacggcctcgccttctccatcctcctcttatactccctctcctgactcaaatactgtttcatcctctccttctcagtcatatcagaa |
41740532 |
T |
|
| Q |
219 |
tccaactcaatcggctttgtctgcggcatcataccaacattcatacaacgaaacttctcggcagcctcccaagtactctcactatacgaaaccgtgattc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41740533 |
tccaactcaatcggctttgtctgcggcatcataccaacattcatacaacgaaacttctcggcagcctcccaagtactctcactatacgaaaccgtgattc |
41740632 |
T |
|
| Q |
319 |
caacagttccatcagcatttgtcttcccttcaagatcaaccttttcaaacattccacttgatgttaaaccatccaattccttctgtaattgggccctagt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41740633 |
caacagttccatcagcatttgtcttcccttcaagatcaaccttttcaaacattccacttgatgttaaaccatccaactccttctgtaattgggccctagt |
41740732 |
T |
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| Q |
419 |
ataa |
422 |
Q |
| |
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|||| |
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| T |
41740733 |
ataa |
41740736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 24171195 - 24171246
Alignment:
| Q |
19 |
catgataccacttctgaaccctatccctaatcttctgcaacaacctagcact |
70 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24171195 |
catgataccatttctgaaccctatccctaatcttctgcaacaacctagcact |
24171246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 375
Target Start/End: Original strand, 24171500 - 24171551
Alignment:
| Q |
324 |
gttccatcagcatttgtcttcccttcaagatcaaccttttcaaacattccac |
375 |
Q |
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|||||||||||||| || |||||||| | ||||||||| ||||||||||||| |
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| T |
24171500 |
gttccatcagcattggttttcccttccatatcaaccttctcaaacattccac |
24171551 |
T |
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