View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15449_high_18 (Length: 416)
Name: NF15449_high_18
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_high_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 14540084 - 14540278
Alignment:
| Q |
18 |
atatcgaccacaacattagaaggaatatataacatatgggtacattcnnnnnnnggtaagaaaaatttattaacaagagtataagggg-taccaccaaac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14540084 |
atatcgaccacaacattagaaggaatatataacatatgggtacattctttttttgataagaaaattttattaacaagagtataagggggtaccaccaaac |
14540183 |
T |
|
| Q |
117 |
ccatcaaaatcgaaatacaacacatttaactaatttttgcaaccttcccttcaaataccaacttattccttgttgtccttaagagtccatatcact |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
14540184 |
ccatcaaaatcgaaatacaacacatttaactaatttttgcaaccttcccttcaaataccaacttattccttattgtcc-taagagtccatatcact |
14540278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 129 - 401
Target Start/End: Original strand, 14541689 - 14541959
Alignment:
| Q |
129 |
aaatacaacacatttaactaatttttgcaaccttcccttcaaataccaacttattccttgttgtccttaagagtccatatcactaatatgtcggcattcc |
228 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| | |||| |||||||||||||||| ||||| | |||||| |
|
|
| T |
14541689 |
aaatacaacacatttaactaattttagcaaccttcccttcaaagaccatcttattccttgctctcct-aagagtccatatcactgatatggctgcattc- |
14541786 |
T |
|
| Q |
229 |
tccgcggcttccaaaccaaacacacaaggaataacttcacaattaactacaatacatcttcgttttaaggctttcgttgaagcaattctgccctgcagaa |
328 |
Q |
| |
|
| ||||||||| ||||||||||||||||||| || ||||||||| |||||||||| |||||||||||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
14541787 |
tatgcggcttccgaaccaaacacacaaggaattacctcacaattagctacaatacaccttcgttttaaggccttcgtcgaagcaattcagccctgcagaa |
14541886 |
T |
|
| Q |
329 |
ctcatcttccatgaatgatgaattttgatggaaccgatgaattccacaactatttatagactttcttgtttct |
401 |
Q |
| |
|
|| | |||| ||||||||||||| ||||||||||||||||||| |||||||||||| |||||| |||||| |
|
|
| T |
14541887 |
cttgccatccacgaatgatgaatttcaatggaaccgatgaattccataactatttataggctttctcgtttct |
14541959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 262 - 401
Target Start/End: Original strand, 14540276 - 14540415
Alignment:
| Q |
262 |
acttcacaattaactacaatacatcttcgttttaaggctttcgttgaagcaattctgccctgcagaactcatcttccatgaatgatgaattttgatggaa |
361 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14540276 |
acttcacaattagctacaatacaccttcgttttaaggctttcgtcgaagcaattctgccttgcagaactcatcttccatgaatgatgaattttgatggaa |
14540375 |
T |
|
| Q |
362 |
ccgatgaattccacaactatttatagactttcttgtttct |
401 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
14540376 |
ccgatgaattccacaactatttataggctttcttatttct |
14540415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University