View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_high_19 (Length: 416)
Name: NF15449_high_19
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 6626959 - 6626717
Alignment:
| Q |
7 |
gtttgagttgcaaagatctcagtagtcatagttctcgtaccaataacctttattgatatttctcctactgcaccaatgcatgctttaacaatcatctatt |
106 |
Q |
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| T |
6626959 |
gtttgagttgcagagatctcagtagtcatagttcacgtaccaataacctttattgatatttctcctactgcaccaatgc----tttaacaatcatctatt |
6626864 |
T |
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| Q |
107 |
aaatttaacttagccattctgcgtttagccgttgagaataagactccattacaaatgacgtgaaacaacacactaaataaaaatgaagcaaaaactatga |
206 |
Q |
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| T |
6626863 |
aaatttaacttagcaattctgcgttcagcccttgagtataagactccattaaaaatgacgtgaaacaccacggtaaataaaaatgaaacaaaaactatga |
6626764 |
T |
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| Q |
207 |
ataaaatcagggaattgacatgtgtaggggatatcctccacatattaaataaa |
259 |
Q |
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| T |
6626763 |
ataaaatcaaggaattgac------aggggatatcctccacatattaaataaa |
6626717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 252 - 404
Target Start/End: Original strand, 6610680 - 6610829
Alignment:
| Q |
252 |
taaataaatgactagcgctgaaccaacccactggagaagccactagaaagcccataaattgtccacttaatgctgctggtatcataagatatattgctat |
351 |
Q |
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| T |
6610680 |
taaataaatgactagcgctgaaccaacccactggagaagccactagaaagcccataaattgtccacttaatgttg---gtatcataagatatattgctat |
6610776 |
T |
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| Q |
352 |
aattgatacagtaaagggatacaagtttacaattaaaaacaaaaggaattcat |
404 |
Q |
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| T |
6610777 |
aattgatacagtaaagggatacaagtttacaattaaaaacaaaaagaattcat |
6610829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 205 - 302
Target Start/End: Complemental strand, 30649210 - 30649113
Alignment:
| Q |
205 |
gaataaaatcagggaattgacatgtgtaggggatatcctccacatattaaataaatgactagcgctgaaccaacccactggagaagccactagaaagc |
302 |
Q |
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| T |
30649210 |
gaataaaatcacggaattgacatgtgtaggggatatcctccacatagaaaataaataactagcggtaaaccaacccattggagaacccactagaaagc |
30649113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 26089557 - 26089500
Alignment:
| Q |
203 |
atgaataaaatcagggaattgacatgtgtaggggatatcctccacatattaaataaat |
260 |
Q |
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| T |
26089557 |
atgaataaaataatggaattgacatgtgtaggggatatcctccacatagaaaataaat |
26089500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 404
Target Start/End: Complemental strand, 26089444 - 26089368
Alignment:
| Q |
328 |
tggtatcataagatatattgctataattgatacagtaaagggatacaagtttacaattaaaaacaaaaggaattcat |
404 |
Q |
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||||||||||| | |||| |||| ||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| |
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| T |
26089444 |
tggtatcataaaaaatatcgctaaaattgatacagaaaaggaatacatgtttataaataaaaacaaaaagaattcat |
26089368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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