View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_high_20 (Length: 414)
Name: NF15449_high_20
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 6 - 404
Target Start/End: Original strand, 8819833 - 8820231
Alignment:
| Q |
6 |
aatgaaatgaacaaagaaacatcatggtaaccaagtgcctgtcccatttgtccaatgatattcatcacacatagtcctgttcccacaccacatagaaatg |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8819833 |
aatgaaatgaacaaagaaacatcatggtaaccaagtgcctgtcccatttgtcccaagttattcatcacacatagtcctgttcccacaccacatagaaatg |
8819932 |
T |
|
| Q |
106 |
atacaaacaaaacccaaaaatcaatagttttaaccatttcaatgattgtatgctcttcacctatcaccggttttcttttaatctcaacttcctctacctt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8819933 |
atacaaacaaaacccaaaaatcaatagttttaaccatttcaatgattgtatgctcttcacctatcaccggttttcttttaatctcaacttcctcttcctt |
8820032 |
T |
|
| Q |
206 |
ggtgtgtgtctcttccttttcttctgaaaccttttgtgccaacaaaggttcatgaacctctttttctttgtcaacactaggcctagttttgaatacgacc |
305 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8820033 |
ggtgcgtgtctcttccttttcttctgaaaccttttgtgccaacaaaggttcatgaacctctttttctttgtcaacactaggcctagttttgaatacgacc |
8820132 |
T |
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| Q |
306 |
aaatataaaggaacaagaagtggcatagctaataggatcaaaagtcctactgtgaaaaccaatgaaataacatgtttatgaggtccagagatatcaaat |
404 |
Q |
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| T |
8820133 |
aaatataaaggaacaagaagtggcatagctaataggatcaaaagtcctactgtgaaaaccaatgaaataacatgtttatgaggtccagagatatcaaat |
8820231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 8818484 - 8818518
Alignment:
| Q |
9 |
gaaatgaacaaagaaacatcatggtaaccaagtgc |
43 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
8818484 |
gaaatgaacaaagaaacaccatggtaaccaagtgc |
8818518 |
T |
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