View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15449_high_21 (Length: 401)
Name: NF15449_high_21
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_high_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 31438744 - 31439104
Alignment:
| Q |
1 |
gagtcctatgttggcagaggcacttggtttgaggtggtgtctctcagttgcaaaagatttgcgattaaataaggtggtggtggagtctgatgttgctgtt |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
31438744 |
gagtcctatgttgacagaggcacttggtttgaggtggtgtctctcagttgcaaaagatttgcgattaaataaggtggtggtggagtctgatgctgctact |
31438843 |
T |
|
| Q |
101 |
gttgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagattgttgttctattttagatttgtttgaggatattaaggtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31438844 |
gttgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagattgttgttctattttagatttgtttgaggatattaaggtta |
31438943 |
T |
|
| Q |
201 |
ctgctattagtagaaatcaaaactttgttgctcatgagttagttcaaatgtccaaagtagttggctctaaaaattgggtggggactgtcccataccaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31438944 |
ctgctattagtagaaatcaaaactttgttgctcatgagttagttcaaatgtccaaagtagttggctctaaaaattgggtggggactgtcccataccaaat |
31439043 |
T |
|
| Q |
301 |
ttctcacttgttatgtaatgtcagtgtttctgctgttatctaattaaagtgtttgatcttc |
361 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| |
|
|
| T |
31439044 |
ttctcacttgttatgtaatgtcagtgcttctgctgttatctaatgaaagtatttgatcttc |
31439104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 31196918 - 31197270
Alignment:
| Q |
1 |
gagtcctatgttggcagaggcacttggtttgaggtggtgtctctcagttgcaaaagatttgcgattaaataaggtggtggtggagtctgatgttgctgtt |
100 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| |||||||||| |||||||||||| |||| ||||| ||||||||||||||||| |||| |||| | |
|
|
| T |
31196918 |
gagtcttatgttggcaaaggcacttggtttgagatggtgtctcttagttgcaaaagacttgcctttaaacaaggtggtggtggagtccgatgatgctact |
31197017 |
T |
|
| Q |
101 |
gttgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagattgttgttctattttagatttgtttgaggatattaaggtta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||| |||| |
|
|
| T |
31197018 |
gttgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaaga---ttgctctattttaaatttgtttgaggatattattgtta |
31197114 |
T |
|
| Q |
201 |
ctgctattagtagaaatcaaaactttgttgctcatgagttagttcaaatgtccaaagtagttggctctaaaaattgggtggggactgtcccataccaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| ||||||| |
|
|
| T |
31197115 |
ctgctattagtagaaatcaaaactctgatgctcgagagttagttcaaatgtccacagtagttggctctaaaaattgggtggtcactttcccacaccaaat |
31197214 |
T |
|
| Q |
301 |
ttctcacttgttatgtaatgtcagtgtttctgctgttatctaattaaagtgtttga |
356 |
Q |
| |
|
|||||||||| | ||||||| ||||||| ||||||||||||| |||| ||||| |
|
|
| T |
31197215 |
ttctcacttgctctgtaatgattctgtttctactgttatctaatttaagtatttga |
31197270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 29250205 - 29250045
Alignment:
| Q |
1 |
gagtcctatgttggcagaggcacttggtttgaggtggtgtctctcagttgcaaaagatttgcgattaaataaggtggtggtggagtctgatgttgctgtt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| | ||||| |||||||||||||||| ||| |||| | |
|
|
| T |
29250205 |
gagtcctatgttggcggaggcacttggtttgagatggtgtctctcagttgcaaaatatttgtgtttaaacaaggtggtggtggagttcaatgcagctgct |
29250106 |
T |
|
| Q |
101 |
gttgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagatt |
161 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29250105 |
gttgtggattgtatcaatgtcaaggctataatggctgcagttgatccaattatccaagatt |
29250045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 226 - 305
Target Start/End: Complemental strand, 29250041 - 29249962
Alignment:
| Q |
226 |
tgttgctcatgagttagttcaaatgtccaaagtagttggctctaaaaattgggtggggactgtcccataccaaatttctc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
29250041 |
tgttgctcatgagttagttcaaatgtccaacatagttggctctaaaaattgggtggggaatgtcccacaccaaatttctc |
29249962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 139 - 306
Target Start/End: Original strand, 28767765 - 28767935
Alignment:
| Q |
139 |
aattgatccaattatccaagattgt---tgttctattttagatttgtttgaggatattaaggttactgctattagtagaaatcaaaactttgttgctcat |
235 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||| ||||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
28767765 |
aattaatccaattatccaagattgttgttgttctattttaattttgtttgaagatatgaagattactactattagtagaaatcaaaactttgttgctgat |
28767864 |
T |
|
| Q |
236 |
gagttagttcaaatgtccaaagtagttggctctaaaaattgggtggggactgtcccataccaaatttctca |
306 |
Q |
| |
|
||||||||||||||| ||||| |||||||| | |||||||||||||||| || ||| ||||||||||||| |
|
|
| T |
28767865 |
gagttagttcaaatgcccaaaatagttggcacaaaaaattgggtggggaaagttccacaccaaatttctca |
28767935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 28768230 - 28768310
Alignment:
| Q |
182 |
tttgaggatattaaggttactgctattagtagaaatcaaaactttgttgctcatgagttagttcaaatgtccaaagtagtt |
262 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |
|
|
| T |
28768230 |
tttgaggatatgaagattactcatattagtagaaatcaaaactttgttgctcatgggttagttcaaatgtctaaaatagtt |
28768310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 28768137 - 28768202
Alignment:
| Q |
102 |
ttgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagattgttgtt |
167 |
Q |
| |
|
|||||| ||||||||||||||| ||| |||| || |||| |||||||||||||||||||||||| |
|
|
| T |
28768137 |
ttgtggtttgtatcaatggcaaatctacgatggatgtaatttatccaattatccaagattgttgtt |
28768202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 28768423 - 28768483
Alignment:
| Q |
246 |
aaatgtccaaagtagttggctctaaaaattgggtggggactgtcccataccaaatttctca |
306 |
Q |
| |
|
||||||||||| || |||| | |||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
28768423 |
aaatgtccaaaataattggttgaaaaaattgggtggggaaagtcccacaccaaatttctca |
28768483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University