View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15449_high_23 (Length: 351)

Name: NF15449_high_23
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15449_high_23
NF15449_high_23
[»] chr2 (11 HSPs)
chr2 (19-343)||(8378905-8379229)
chr2 (84-343)||(30395694-30395953)
chr2 (137-343)||(30476520-30476726)
chr2 (84-343)||(30384942-30385201)
chr2 (136-343)||(23783261-23783468)
chr2 (106-343)||(30484667-30484904)
chr2 (136-343)||(23768614-23768821)
chr2 (92-335)||(30425235-30425478)
chr2 (84-343)||(30431260-30431519)
chr2 (92-335)||(30469334-30469577)
chr2 (137-343)||(30437568-30437774)
[»] chr5 (1 HSPs)
chr5 (87-343)||(41626754-41627010)
[»] chr8 (4 HSPs)
chr8 (135-335)||(15858459-15858659)
chr8 (135-288)||(15865574-15865727)
chr8 (140-333)||(15844326-15844519)
chr8 (140-288)||(15851606-15851754)


Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 8379229 - 8378905
Alignment:
19 gtatccaccagcatttggtgttactcgatatgttggcaaagacataaagtttggaaacatggaagtacctgctggagtggaagttttcttaccaattatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8379229 gtatccaccagcatttggtgttactcgatatgttggcaaagacataaagtttggaaacatggaagtacctgctggagtggaagttttcttaccaattatt 8379130  T
119 ttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagattta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8379129 ttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagattta 8379030  T
219 tatatttcccatttggagggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttcta 318  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
8379029 tatattttccatttggagggggtcctagagtttgcatgggacaaaacttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttcta 8378930  T
319 ttttgaactttctccaacctatgct 343  Q
    |||||||||||||||||||||||||    
8378929 ttttgaactttctccaacctatgct 8378905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 84 - 343
Target Start/End: Original strand, 30395694 - 30395953
Alignment:
84 tacctgctggagtggaagttttcttaccaattattttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgc 183  Q
    |||||||||||||||| ||||||||||||||| ||||| |||| ||| ||    |||||||||| |||||||| || ||||||||||||||||||||| |    
30395694 tacctgctggagtggaggttttcttaccaattcttttgattcatcatgactgcaaactatggggcgatgatgctaaaatgttcaatcctgagagattttc 30395793  T
184 tgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggagggggtcctagagtttgcatgggacaaaatttttccctattggaagca 283  Q
     | ||||||||| |||||||||||||||||| ||  || ||| ||||||||| ||||||| ||| ||||||| |||||||| ||||||||| ||||||||    
30395794 cggaggaatttctaaagcaacaaatggtagagtttcattttttccatttggatggggtccaagaatttgcattggacaaaacttttccctaatggaagca 30395893  T
284 aagatggcagtgtcaatgattttacaaaatttctattttgaactttctccaacctatgct 343  Q
    ||||||||| ||||||||||||| ||| |||| |  |||||||||||  |||||||||||    
30395894 aagatggcattgtcaatgattttgcaacatttttcatttgaactttcctcaacctatgct 30395953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 137 - 343
Target Start/End: Original strand, 30476520 - 30476726
Alignment:
137 gaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggag 236  Q
    |||||||||||||| ||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||  || ||| ||||||||||    
30476520 gaactatggggtgaagatgctaaggtgttcaatcctgagagattttctggaggaatttccaaagcaacaaatgggagattttcattttttccatttggag 30476619  T
237 ggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctccaac 336  Q
    ||||||| ||| ||||||| ||||||||||||||| | |||||||||||||||||| || ||||||||||| |||| ||||  ||||||||||||||| |    
30476620 ggggtccaagaatttgcattggacaaaatttttccatgttggaagcaaagatggcaatggcaatgattttaaaaaaattctcatttgaactttctccatc 30476719  T
337 ctatgct 343  Q
     ||||||    
30476720 ttatgct 30476726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 84 - 343
Target Start/End: Original strand, 30384942 - 30385201
Alignment:
84 tacctgctggagtggaagttttcttaccaattattttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgc 183  Q
    ||||||||||||||||  |||||||||||||| ||||| |||| ||| ||   |||||||||||||||||||| || |||||||||||||| ||||||      
30384942 tacctgctggagtggagattttcttaccaattcttttgattcaccatgactgcgaactatggggtgatgatgctaaaatgttcaatcctgaaagattttt 30385041  T
184 tgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggagggggtcctagagtttgcatgggacaaaatttttccctattggaagca 283  Q
    || |||||||||||||||||||||||| ||| ||  || ||| ||||||||| |||||||| || ||||||| |||||||| ||||| ||| ||||||||    
30385042 tggaggaatttccaaagcaacaaatggaagagtttcattttttccatttggatggggtcctcgaatttgcattggacaaaacttttctctaatggaagca 30385141  T
284 aagatggcagtgtcaatgattttacaaaatttctattttgaactttctccaacctatgct 343  Q
    || |||||| || || ||||||| ||| ||||||  ||||||||||| || |||||||||    
30385142 aaaatggcaatgacattgattttgcaacatttctcatttgaactttcaccgacctatgct 30385201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 136 - 343
Target Start/End: Complemental strand, 23783468 - 23783261
Alignment:
136 tgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttgga 235  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||| |||  |||||||||||||||||||| |||||||||  |||||| || ||||||    
23783468 tgaactatggggtgatgatgctaagattttcaatcctgagagattttctggtggaatttccaaagcaacaaacggtagattttcatattttccgtttgga 23783369  T
236 gggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctccaa 335  Q
    | |||||||||| | ||||| |||||||| |||||||| |||||||||||||||||| || || |||||||| | ||||| |  ||||||||||||| ||    
23783368 gcgggtcctagaatctgcattggacaaaacttttccctgttggaagcaaagatggcaatggcattgattttaaagaatttttcatttgaactttctcaaa 23783269  T
336 cctatgct 343  Q
    | ||||||    
23783268 catatgct 23783261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 106 - 343
Target Start/End: Original strand, 30484667 - 30484904
Alignment:
106 cttaccaattattttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaaca 205  Q
    |||||||||  ||| | |||| || ||| |||||||||||||||| ||||| ||| |||||||||||||||||||||| |||||| |||| |||||||||    
30484667 cttaccaatagtttggattcaccacaaccatgaactatggggtgaagatgctaaggtgttcaatcctgagagatttgcagaaggagtttcaaaagcaaca 30484766  T
206 aatggtagatttatatatttcccatttggagggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattt 305  Q
    |||||||||  |  || ||| ||||||||||||||||||||| |||| || |||||||| |||||| | |||||||||||||||||| |  || ||||||    
30484767 aatggtagaaattcattttttccatttggagggggtcctagaatttgtattggacaaaacttttccatgttggaagcaaagatggcaataacattgattt 30484866  T
306 tacaaaatttctattttgaactttctccaacctatgct 343  Q
    | ||  ||||||  ||||||||||||||||||||||||    
30484867 tgcagcatttctcatttgaactttctccaacctatgct 30484904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 136 - 343
Target Start/End: Original strand, 23768614 - 23768821
Alignment:
136 tgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttgga 235  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||| |||  |||||||||||||||||||| |||||||||  |||||| || ||||||    
23768614 tgaactatggggtgatgatgctaagattttcaatcctgagagattttctggtggaatttccaaagcaacaaacggtagattttcatattttccgtttgga 23768713  T
236 gggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctccaa 335  Q
    |  ||||||||| | ||||| ||||| |  ||||| ||||||||||||||||||||| || || |||||||||| ||||| |  ||||||||||||| ||    
23768714 gcaggtcctagaatctgcattggacagaccttttctctattggaagcaaagatggcaatggcattgattttacagaatttttcatttgaactttctcaaa 23768813  T
336 cctatgct 343  Q
    | ||||||    
23768814 catatgct 23768821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 92 - 335
Target Start/End: Original strand, 30425235 - 30425478
Alignment:
92 ggagtggaagttttcttaccaattattttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaa 191  Q
    |||||| | ||||||||| | || |||||| |||| ||| |||  |||||||||||||||||||| ||| |||||||||| ||||||||| | |||||      
30425235 ggagtgcaggttttcttatcgataattttggttcaccatgacatagaactatggggtgatgatgctaaggtgttcaatcccgagagattttcagaaggtg 30425334  T
192 tttccaaagcaacaaatggtagatttatatatttcccatttggagggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggc 291  Q
    |||  |||||||||||||| |||  |  || ||| ||||||||||||||||||||| ||||||| |||||||| |||||  | |||||||||||||||||    
30425335 ttttaaaagcaacaaatggaagaaattcattttttccatttggagggggtcctagaatttgcattggacaaaacttttctatgttggaagcaaagatggc 30425434  T
292 agtgtcaatgattttacaaaatttctattttgaactttctccaa 335  Q
    | |  ||||||||||||||  |||| | || |||||||||||||    
30425435 aatagcaatgattttacaacgtttcgacttcgaactttctccaa 30425478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 84 - 343
Target Start/End: Original strand, 30431260 - 30431519
Alignment:
84 tacctgctggagtggaagttttcttaccaattattttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgc 183  Q
    ||||||| |||||| | ||||||||| | || |||||| |||| ||| |||  |||||||||||||| ||||| ||| |||||||||| ||||||||| |    
30431260 tacctgcaggagtgcaggttttcttatcgataattttggttcaccatgacatagaactatggggtgaagatgctaaggtgttcaatcccgagagattttc 30431359  T
184 tgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggagggggtcctagagtttgcatgggacaaaatttttccctattggaagca 283  Q
     |||||  |||  |||||||||||||| |||  |  || | | ||||||| ||||||||||||| |||| || |||||||| |||||| | |||||||||    
30431360 agaaggtgttttaaaagcaacaaatggaagaaattcatttattccatttgaagggggtcctagaatttgaattggacaaaacttttccatgttggaagca 30431459  T
284 aagatggcagtgtcaatgattttacaaaatttctattttgaactttctccaacctatgct 343  Q
    ||||||||| |  ||||||||||||||  |||||  ||||||||||||||| | ||||||    
30431460 aagatggcaatagcaatgattttacaacgtttctcatttgaactttctccatcttatgct 30431519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 92 - 335
Target Start/End: Original strand, 30469334 - 30469577
Alignment:
92 ggagtggaagttttcttaccaattattttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaa 191  Q
    |||||| | ||||||||| | || ||| || |||| ||| |||  |||||||||||||| ||||| ||| |||||||||| ||||||||| |||||||      
30469334 ggagtgcaggttttcttatcgataattatggttcaccatgacatagaactatggggtgaagatgctaaggtgttcaatcccgagagattttctgaaggtg 30469433  T
192 tttccaaagcaacaaatggtagatttatatatttcccatttggagggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggc 291  Q
    |||  |||||||| ||||| |||  |  || ||| ||||||| ||||||||||||| ||||||| ||||| || |||||| | |||||||||||||||||    
30469434 ttttaaaagcaaccaatggaagaaattcattttttccatttgcagggggtcctagaatttgcattggacagaacttttccatgttggaagcaaagatggc 30469533  T
292 agtgtcaatgattttacaaaatttctattttgaactttctccaa 335  Q
    | |  ||||||||||||||  |||||  ||||||||||||||||    
30469534 aatagcaatgattttacaacgtttctcatttgaactttctccaa 30469577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 137 - 343
Target Start/End: Original strand, 30437568 - 30437774
Alignment:
137 gaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggag 236  Q
    |||||||||||||| ||||| ||| |||||||||||||||||||| |||||||  |||  |||||||||||||| |||  |  || | | ||||||||||    
30437568 gaactatggggtgacgatgctaaggtgttcaatcctgagagattttctgaaggtgttttgaaagcaacaaatggaagaaattcatttgttccatttggag 30437667  T
237 ggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctccaac 336  Q
    ||||||||||| ||||||| ||||| || |||||  | |||||||||||||||||  |  ||||||||||||||  |||||  || |||||||||||| |    
30437668 ggggtcctagaatttgcattggacagaacttttctatgttggaagcaaagatggcgatagcaatgattttacaacgtttctcattcgaactttctccatc 30437767  T
337 ctatgct 343  Q
     ||||||    
30437768 ttatgct 30437774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 87 - 343
Target Start/End: Complemental strand, 41627010 - 41626754
Alignment:
87 ctgctggagtggaagttttcttaccaattattttgcttcaacataacaatgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctga 186  Q
    ||||||||||||| |||||| | |||||||| ||| | || ||| |   |||| |||||||||||||||| || |||||||||||||| |||||| |||     
41627010 ctgctggagtggaggttttcatgccaattatattgttgcaccatgattgtgaattatggggtgatgatgctaaaatgttcaatcctgaaagattttctgg 41626911  T
187 aggaatttccaaagcaacaaatggtagatttatatatttcccatttggagggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaag 286  Q
    |||||||||||||||||| || |||||| ||  || ||| ||||||||| ||||||||||  | ||||| || ||||| ||||| |||||||||||||||    
41626910 aggaatttccaaagcaacgaacggtagagtttcattttttccatttggatggggtcctaggatctgcattgggcaaaacttttctctattggaagcaaag 41626811  T
287 atggcagtgtcaatgattttacaaaatttctattttgaactttctccaacctatgct 343  Q
    |||||| || || ||||||||||  ||||||  ||| ||||||||||| ||||||||    
41626810 atggcaatgacattgattttacagcatttctcatttcaactttctccagcctatgct 41626754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 135 - 335
Target Start/End: Complemental strand, 15858659 - 15858459
Alignment:
135 atgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttgg 234  Q
    |||| |||||||||||||||||||||  |||||| ||||| || ||||||||||||||| | || |||||||| ||   | ||   |||||||| |||||    
15858659 atgatctatggggtgatgatgcaaaggagttcaaacctgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccttttgg 15858560  T
235 agggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctcca 334  Q
    | ||||||||||| ||||  | |||||||| ||| || |||| ||||||||||| ||||| ||| || |  | || |||||||  || ||||||||||||    
15858559 atggggtcctagaatttgtcttggacaaaactttgccttattagaagcaaagatagcagtatcattgttgctgcagaatttctcattcgaactttctcca 15858460  T
335 a 335  Q
    |    
15858459 a 15858459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 135 - 288
Target Start/End: Complemental strand, 15865727 - 15865574
Alignment:
135 atgaactatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttgg 234  Q
    |||| |||||||||||||||||||||  |||||| ||||| || ||||||||||||||| | || || ||||| || | | ||   |||||||| |||||    
15865727 atgatctatggggtgatgatgcaaaggagttcaaacctgaaaggtttgctgaaggaattgcaaaggctacaaaaggaaaagtttcttatttcccttttgg 15865628  T
235 agggggtcctagagtttgcatgggacaaaatttttccctattggaagcaaagat 288  Q
    | ||||||||||| ||||  | |||||||| ||| || || | |||||||||||    
15865627 atggggtcctagaatttgtcttggacaaaactttgccttactagaagcaaagat 15865574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 333
Target Start/End: Complemental strand, 15844519 - 15844326
Alignment:
140 ctatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggagggg 239  Q
    |||||||| ||||||||||||  |||||| || || || ||||||||||||||| | || |||||||| ||   | ||   |||||||| |||||| |||    
15844519 ctatggggggatgatgcaaaggagttcaaacccgaaaggtttgctgaaggaattgcgaaggcaacaaaaggacaagtttcttatttcccctttggatggg 15844420  T
240 gtcctagagtttgcatgggacaaaatttttccctattggaagcaaagatggcagtgtcaatgattttacaaaatttctattttgaactttctcc 333  Q
    |||||||| ||||  | |||||||| ||| || |||| ||||||||||| ||| | ||| || |  | || |||||||  ||||||||||||||    
15844419 gtcctagaatttgtcttggacaaaactttaccttattagaagcaaagatagcaatatcattgttgctgcagaatttctcatttgaactttctcc 15844326  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 288
Target Start/End: Complemental strand, 15851754 - 15851606
Alignment:
140 ctatggggtgatgatgcaaagatgttcaatcctgagagatttgctgaaggaatttccaaagcaacaaatggtagatttatatatttcccatttggagggg 239  Q
    |||||||||||||||||||||| ||||||||||||  | ||| ||||||||||| | || || ||||| ||   | ||   ||| |||| |||||| |||    
15851754 ctatggggtgatgatgcaaagaagttcaatcctgaacggttttctgaaggaattgcaaaggccacaaaaggccaagtttcgtatatcccttttggatggg 15851655  T
240 gtcctagagtttgcatgggacaaaatttttccctattggaagcaaagat 288  Q
    |||||||| ||||  | |||||||| ||| || |||| |||||||||||    
15851654 gtcctagaatttgtcttggacaaaactttgccttattagaagcaaagat 15851606  T

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