View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15449_high_27 (Length: 331)

Name: NF15449_high_27
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15449_high_27
NF15449_high_27
[»] chr7 (15 HSPs)
chr7 (49-331)||(7063003-7063285)
chr7 (13-107)||(7058725-7058819)
chr7 (13-92)||(7013973-7014052)
chr7 (13-92)||(7029331-7029410)
chr7 (203-264)||(7058318-7058379)
chr7 (204-268)||(7013653-7013717)
chr7 (204-268)||(7029011-7029075)
chr7 (112-153)||(7029204-7029245)
chr7 (211-247)||(7056680-7056716)
chr7 (214-247)||(7010836-7010869)
chr7 (277-331)||(7013582-7013640)
chr7 (112-153)||(7013846-7013887)
chr7 (214-247)||(7026194-7026227)
chr7 (277-331)||(7028940-7028998)
chr7 (112-161)||(7058608-7058657)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 49 - 331
Target Start/End: Complemental strand, 7063285 - 7063003
Alignment:
Q  49 tgaattactgtcaagagagcatattttgcaatgaacgtagtagttgaataaaagtgcttaaattttatattggaatggttaaagtttaaatggtattagt 148  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7063285 tgaataactgtcaagagagcatattttgcaatgaacgtagtagttgaataaaagtgcttaaattttatattggaatggttaaagtttaaatggtattagt 7063186  T
Q  149 attcatgattagaagagctttgagtttgatttacttttgacagtatttgtttgatttgggggatgtactacttgaaggagtggatttgtttttaaataaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7063185 attcatgattagaagagctttgagtttgatttacttttgacagtacttgtttgatttgggggatgtactacttgaaggagtggatttgtttttaaataaa 7063086  T
Q  249 tgattctgtcaacgttgtctcnnnnnnnattaagagatgtggttgtattaaaaagacaaatgtattttgtggtcttctaagtt 331  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7063085 tgattctgtcaacgttgtctctttttttattaagagatgtggttgtattaaaaagacaaatgtattttgtggtcttctaagtt 7063003  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 7058819 - 7058725
Alignment:
Q  13 aataagatatgaatgttggaaagttgcttaaatttgtgaattactgtcaagagagcatattttgcaatgaacgtagtagttgaataaaagtgctt 107  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  7058819 aataacatatgaatgttggaaagttgcttaaatttatgaattactgtcaagagagcatattttgcaatcaacgtagtagtcgaataaaagtgctt 7058725  T

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Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 7014052 - 7013973
Alignment:
Q  13 aataagatatgaatgttggaaagttgcttaaatttgtgaattactgtcaagagagcatattttgcaatgaacgtagtagt 92  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  7014052 aataacatatgaatgttggaaagttgcttaaatttatgaattactgtcaagagagcatattttgcaatgaatgtagtagt 7013973  T

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Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 7029410 - 7029331
Alignment:
Q  13 aataagatatgaatgttggaaagttgcttaaatttgtgaattactgtcaagagagcatattttgcaatgaacgtagtagt 92  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  7029410 aataacatatgaatgttggaaagttgcttaaatttatgaattactgtcaagagagcatattttgcaatgaatgtagtagt 7029331  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 7058379 - 7058318
Alignment:
Q  203 tttgggggatgtactacttgaaggagtggatttgtttttaaataaatgattctgtcaacgtt 264  Q
    |||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7058379 tttgggggttgtcctacttgaaggagtggattagtttttaaataaatgattctgtcaacgtt 7058318  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 7013717 - 7013653
Alignment:
Q  204 ttgggggatgtactacttgaaggagtggatttgtttttaaataaatgattctgtcaacgttgtct 268  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||    
T  7013717 ttgggggctgtactacttgaaggagtggattagtttttaaataaatcattctgtcaacattgtct 7013653  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 7029075 - 7029011
Alignment:
Q  204 ttgggggatgtactacttgaaggagtggatttgtttttaaataaatgattctgtcaacgttgtct 268  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||    
T  7029075 ttgggggctgtactacttgaaggagtggattagtttttaaataaatcattctgtcaacattgtct 7029011  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 7029245 - 7029204
Alignment:
Q  112 tttatattggaatggttaaagtttaaatggtattagtattca 153  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    
T  7029245 tttatgttggaatggttaaagtttagatggtattagtattca 7029204  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 7056716 - 7056680
Alignment:
Q  211 atgtactacttgaaggagtggatttgtttttaaataa 247  Q
    |||||||||||||||||||||||| ||||||||||||    
T  7056716 atgtactacttgaaggagtggattagtttttaaataa 7056680  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 7010869 - 7010836
Alignment:
Q  214 tactacttgaaggagtggatttgtttttaaataa 247  Q
    ||||||||||||||||||||| ||||||||||||    
T  7010869 tactacttgaaggagtggattagtttttaaataa 7010836  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 7013640 - 7013582
Alignment:
Q  277 attaagagatgtggttgtattaaaaagacaaat----gtattttgtggtcttctaagtt 331  Q
    |||||||||||| | ||||||||||||||||||    |||||||| |||||||||||||    
T  7013640 attaagagatgttgatgtattaaaaagacaaatgtatgtattttggggtcttctaagtt 7013582  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 7013887 - 7013846
Alignment:
Q  112 tttatattggaatggttaaagtttaaatggtattagtattca 153  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||    
T  7013887 tttatgttgaaatggttaaagtttagatggtattagtattca 7013846  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 7026227 - 7026194
Alignment:
Q  214 tactacttgaaggagtggatttgtttttaaataa 247  Q
    ||||||||||||||||||||| ||||||||||||    
T  7026227 tactacttgaaggagtggattagtttttaaataa 7026194  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 7028998 - 7028940
Alignment:
Q  277 attaagagatgtggttgtattaaaaagacaaat----gtattttgtggtcttctaagtt 331  Q
    |||||||||||| | ||||||||||||||||||    |||||||| |||||||||||||    
T  7028998 attaagagatgttgatgtattaaaaagacaaatgtatgtattttggggtcttctaagtt 7028940  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 7058657 - 7058608
Alignment:
Q  112 tttatattggaatggttaaagtttaaatggtattagtattcatgattaga 161  Q
    ||||||||||||||||| |||||||  | ||||||| |||||||||||||    
T  7058657 tttatattggaatggttgaagtttagcttgtattaggattcatgattaga 7058608  T

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