View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_high_28 (Length: 319)
Name: NF15449_high_28
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_high_28 |
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| [»] scaffold0867 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 9212130 - 9212421
Alignment:
| Q |
19 |
gtttcaccatttctcaaatagtcatccacactatcagcaaatgtttcatctgccaacatacaaataacatcagtgcatttttgtatgggtgaaatactta |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
9212130 |
gtttcaccatttctcaaatagtcatccacactatcagcagatgtttcatctgccaacatacaaataacatcagtgcatttttttatgggtgaaatatttg |
9212229 |
T |
|
| Q |
119 |
atctacccgctgcgtcaaccctcggctgaaaatactcatcatgtcgactaagagtttcaactatgtgaaggaaaacatgtttacacattcggtacctttg |
218 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
9212230 |
atctacccggtgcgtcaaccctcagctgaaaatactcatcatgttgatcaagagtttcaactatgtgaaggaaaacatgtttacgcattcggtaccttcg |
9212329 |
T |
|
| Q |
219 |
aggaaattgctcatccgtgtaaactagagcttctaaaaattaatcattgaataaccgctcatgtccttcttcatgatttctatgtttcttct |
310 |
Q |
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| T |
9212330 |
acgaaattgctcatccgtgtaaactagagcttctaaaaaataatcattgaataactgttcatgtccttcttcatgatttctatgtttcttct |
9212421 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0867 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: scaffold0867
Description:
Target: scaffold0867; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 2386 - 2109
Alignment:
| Q |
19 |
gtttcaccatttctcaaatagtcatccacactatcagcaaatgtttcatctgccaacatacaaataacatcagtgcatttttgtatgggtgaaatactta |
118 |
Q |
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||||||||| |||||||||| ||||||||| |||| ||| ||||| ||| ||||| ||||| ||||||| ||||||||||||||| ||||||||||||| |
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| T |
2386 |
gtttcaccaattctcaaatattcatccacattatcggcagatgttccatatgccagcatacgaataacagcagtgcatttttgtaggggtgaaatacttg |
2287 |
T |
|
| Q |
119 |
atctacccgctgcgtcaaccctcggctgaaaatactcatcatgtcgactaagagtttcaactatgtgaaggaaaacatgtttacacattcggtacctttg |
218 |
Q |
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| T |
2286 |
gtctaccagttgcgtcaaccttcggctgaaaatattcatcatgttggctaagagcttcaactatacgaaggaaaacatgtttacgcattcggtaccttcg |
2187 |
T |
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| Q |
219 |
aggaaattgctcatccgtgtaaactagagcttctaaaaattaatcattgaataaccgctcatgtccttcttcatgatt |
296 |
Q |
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| | ||||||||||| ||| |||| ||| |||| |||| ||||||||||||||||||| ||||||||||||| |||| |
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| T |
2186 |
acggaattgctcatctgtgaaaaccggagtttctgaaaaataatcattgaataaccgcttatgtccttcttcacgatt |
2109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 23561271 - 23561543
Alignment:
| Q |
18 |
agtttcaccatttctcaaatagtcatccacactatcagcaaatgtttcatctgccaacatacaaataacatcagtgcatttttgtatgggtgaaatactt |
117 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||| ||||||||||||||| |||||||||| | |
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| T |
23561271 |
agtttcaccaattctcaaatagtcatccacactatcagcagatgttccatatgccaacatacgaataacagcagtgcatttttgtagtggtgaaatacct |
23561370 |
T |
|
| Q |
118 |
aatctacccgctgcgtcaaccctcggctgaaaatactcatcatgtcgactaagagtttcaactatgtgaaggaaaacatgtttacacattcggtaccttt |
217 |
Q |
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||||||| | ||| ||||||||| |||||||||||||||||| | | ||||||| |||||||| | |||| || ||||||||| |||||| |||||| |
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| T |
23561371 |
gatctaccagttgcatcaaccctcagctgaaaatactcatcatattggctaagagcttcaactaagcgaagaaagacatgtttatgcattcgatacctta |
23561470 |
T |
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| Q |
218 |
gaggaaattgctcatccgtgtaaactagagcttctaaaaattaatcattgaataaccgctcatgtccttcttc |
290 |
Q |
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|| | || |||||||||||||| ||| ||| |||| |||| |||||||||||||| ||||||||||||||||| |
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| T |
23561471 |
gacggaactgctcatccgtgtacactggagtttctgaaaaataatcattgaataatcgctcatgtccttcttc |
23561543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 48264248 - 48264521
Alignment:
| Q |
17 |
cagtttcaccatttctcaaatagtcatccacactatcagcaaatgtttcatctgccaacatacaaataacatcagtgcatttttgtatgggtgaaatact |
116 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||| ||||||||||||||| |||||||||| |
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| T |
48264248 |
cagtttcaccaattctcaaatagtcatccacactatcagcagatgttccatatgccaacatacgaataacaacagtgcatttttgtagtggtgaaatacc |
48264347 |
T |
|
| Q |
117 |
taatctacccgctgcgtcaaccctcggctgaaaatactcatcatgtcgactaagagtttcaactatgtgaaggaaaacatgtttacacattcggtacctt |
216 |
Q |
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| |||||| | ||| ||||||||| ||||||||||| |||||| | | | ||||| |||||||||| |||| || ||||||||| ||||||||||||| |
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| T |
48264348 |
tgatctactagttgcatcaaccctcagctgaaaatacccatcatattggccaagagcttcaactatgcgaagaaagacatgtttatgcattcggtacctt |
48264447 |
T |
|
| Q |
217 |
tgaggaaattgctcatccgtgtaaactagagcttctaaaaattaatcattgaataaccgctcatgtccttcttc |
290 |
Q |
| |
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|| || |||||||||||||| ||||||| |||| |||| |||||||||||||| |||| ||||||||||| |
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| T |
48264448 |
agacagaactgctcatccgtgtacactagagtttctgaaaaataatcattgaataatcgcttgtgtccttcttc |
48264521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 29 - 291
Target Start/End: Original strand, 16681149 - 16681411
Alignment:
| Q |
29 |
ttctcaaatagtcatccacactatcagcaaatgtttcatctgccaacatacaaataacatcagtgcatttttgtatgggtgaaatacttaatctacccgc |
128 |
Q |
| |
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|||||||||| |||||||||||||| ||| | || ||| ||||| |||| |||||||||||||||||||| || ||||||||||||| ||||||| |
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| T |
16681149 |
ttctcaaatattcatccacactatcgacaactattccatacgccaaaatacgaataacatcagtgcatttttttaggggtgaaatacttgatctaccact |
16681248 |
T |
|
| Q |
129 |
tgcgtcaaccctcggctgaaaatactcatcatgtcgactaagagtttcaactatgtgaaggaaaacatgtttacacattcggtacctttgaggaaattgc |
228 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| |||||||||| |||||| |||||| | || ||| |
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| T |
16681249 |
tgcgtcaaccctcggctgaaaatattcatcatgttgactaagagcttcaactatgtgaaggaagacatgtttacgcattcgataccttcaacagaactgc |
16681348 |
T |
|
| Q |
229 |
tcatccgtgtaaactagagcttctaaaaattaatcattgaataaccgctcatgtccttcttca |
291 |
Q |
| |
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||||||||||||||| |||||||| |||| ||||||| |||||| |||| ||| || |||||| |
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| T |
16681349 |
tcatccgtgtaaactggagcttctgaaaaataatcatcgaataaacgcttatgcccgtcttca |
16681411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 5190176 - 5189903
Alignment:
| Q |
19 |
gtttcaccatttctcaaatagtcatccacactatcagcaaatgtttcatctgccaacatacaaataacatcagtgcatttttgtatgggtgaaatactta |
118 |
Q |
| |
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||||||||| | |||||||| ||||||||| |||| || ||||| ||| |||||| ||||| |||| || |||||||||||| ||||||||||||| |
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| T |
5190176 |
gtttcaccaatactcaaatattcatccacattatcgacatatgttccatatgccaatgtacaaccaacaacaatgcatttttgtaggggtgaaatacttg |
5190077 |
T |
|
| Q |
119 |
atctacccgctgcgtcaaccctcggctgaaaatactcatcatgtcgactaagagtttcaactatgtgaaggaaaacatgtttacacattcggtacctttg |
218 |
Q |
| |
|
|||||| | |||||||||||||| ||||||||| ||||||||| ||||||||| ||||| |||| ||||||| |||||||||| ||||||||||||| | |
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|
| T |
5190076 |
gtctaccagttgcgtcaaccctcgactgaaaatattcatcatgttgactaagagcttcaattatgcgaaggaagacatgtttacgcattcggtaccttag |
5189977 |
T |
|
| Q |
219 |
aggaaattgctcatccgtgta-aactagagcttctaaaaattaatcattgaataaccgctcatgtccttcttca |
291 |
Q |
| |
|
| | || |||| ||||||||| || |||||| | |||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
5189976 |
acggaactgctgatccgtgtataatcggagcttatgaaaaataatcattgaataaccgcttatgtccttcttca |
5189903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 129 - 296
Target Start/End: Complemental strand, 1885763 - 1885596
Alignment:
| Q |
129 |
tgcgtcaaccctcggctgaaaatactcatcatgtcgactaagagtttcaactatgtgaaggaaaacatgtttacacattcggtacctttgaggaaattgc |
228 |
Q |
| |
|
|||||||||| || |||||||||| ||||||||| ||| ||||| |||||||||| ||||||| ||||||||| ||||||||||||| || |||| | | |
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| T |
1885763 |
tgcgtcaaccgtcagctgaaaatattcatcatgttgaccaagagcttcaactatgcgaaggaagacatgtttatgcattcggtaccttcgacgaaactac |
1885664 |
T |
|
| Q |
229 |
tcatccgtgtaaactagagcttctaaaaattaatcattgaataaccgctcatgtccttcttcatgatt |
296 |
Q |
| |
|
|||||| ||||||| |||||||| |||| ||||| ||||||||||||| || |||||||||| |||| |
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|
| T |
1885663 |
tcatccatgtaaaccggagcttctgaaaaataatcgttgaataaccgcttatatccttcttcacgatt |
1885596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 296
Target Start/End: Original strand, 29986614 - 29986777
Alignment:
| Q |
133 |
tcaaccctcggctgaaaatactcatcatgtcgactaagagtttcaactatgtgaaggaaaacatgtttacacattcggtacctttgaggaaattgctcat |
232 |
Q |
| |
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|||| ||||||| ||||||| ||||||||| || ||||| ||| || || |||||| |||||||| |||||| |||||| || ||| |||| || |
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| T |
29986614 |
tcaatcctcggcagaaaataatcatcatgtttaccaagagcttcgacgatacaaaggaaggcatgtttatgcattcgataccttcgacaaaactgctaat |
29986713 |
T |
|
| Q |
233 |
ccgtgtaaactagagcttctaaaaattaatcattgaataaccgctcatgtccttcttcatgatt |
296 |
Q |
| |
|
|| |||| |||||| |||| |||| |||| |||||| ||||||| ||||||||||||| |||| |
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|
| T |
29986714 |
ccatgtaccctagagtttctgaaaagtaattattgaacaaccgcttatgtccttcttcacgatt |
29986777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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