View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15449_high_29 (Length: 312)
Name: NF15449_high_29
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_high_29 |
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| [»] chr4 (7 HSPs) |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 11445126 - 11445426
Alignment:
| Q |
12 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11445126 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
11445225 |
T |
|
| Q |
112 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11445226 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
11445325 |
T |
|
| Q |
212 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttataggagtgcca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
11445326 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaataggctgagttccttgtcctcagtgagccatttcttagaggagtgcca |
11445425 |
T |
|
| Q |
312 |
c |
312 |
Q |
| |
|
| |
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|
| T |
11445426 |
c |
11445426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 312
Target Start/End: Complemental strand, 11547964 - 11547664
Alignment:
| Q |
12 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11547964 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
11547865 |
T |
|
| Q |
112 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11547864 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
11547765 |
T |
|
| Q |
212 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttataggagtgcca |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
11547764 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaataggctgagttccttgtcctcagtgagccatttcttagaggagtgcca |
11547665 |
T |
|
| Q |
312 |
c |
312 |
Q |
| |
|
| |
|
|
| T |
11547664 |
c |
11547664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 11507733 - 11507438
Alignment:
| Q |
12 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11507733 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
11507634 |
T |
|
| Q |
112 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
211 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11507633 |
ttcaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
11507534 |
T |
|
| Q |
212 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttataggagt |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| || |||||| |
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| T |
11507533 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagagactgagttccttctcctcagtgagccatttcgtagaggagt |
11507438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 11468116 - 11468416
Alignment:
| Q |
12 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
111 |
Q |
| |
|
||||||||||||||| || ||||||||||||| || ||||| ||||||| |||||||||| | | |||| | |||||| | |||||||| | ||| |
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| T |
11468116 |
aacctgtggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagat |
11468215 |
T |
|
| Q |
112 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
211 |
Q |
| |
|
|||||||| ||||||||||| |||| || || |||||||| || || ||||| |||||||| ||||| ||| ||||||||| || |||| |||||||| |
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| T |
11468216 |
tccaaaccctcaaacacatggctgcagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacagaccaagtttatcagatt |
11468315 |
T |
|
| Q |
212 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttataggagtgcca |
311 |
Q |
| |
|
||| ||||||||||||| ||| |||||||||| || |||| || ||| | || ||| ||||| ||||| | || |||||||||| |||||||||| |
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| T |
11468316 |
cagaatctttgttaagaaagttaaaaaatgtctcccccattgcactttcataaagtgcaagatccttctcctctgagaaccatttcttagaggagtgcca |
11468415 |
T |
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| Q |
312 |
c |
312 |
Q |
| |
|
| |
|
|
| T |
11468416 |
c |
11468416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 12 - 312
Target Start/End: Complemental strand, 11523345 - 11523045
Alignment:
| Q |
12 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
111 |
Q |
| |
|
||||||||||||||| || ||||||||||||| || ||||| ||||||| |||||||||| | | |||| | |||||| | |||||||| | ||| |
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|
| T |
11523345 |
aacctgtggttgatctaaaactgtgcatttgatgtgtggaaattcttcatgaatgagttttgacacaactccagtcccacctgccacatcaaccaaagat |
11523246 |
T |
|
| Q |
112 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
211 |
Q |
| |
|
|||||||| ||||||||||| |||| || || |||||||| || || ||||| |||||||| ||||| ||| ||||||||| || |||| |||||||| |
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|
| T |
11523245 |
tccaaaccctcaaacacatggctgcagtccttgagagcaagcttaaacatttgtgaatcagctgccatggccccttgaaacagaccaagtttatcagatt |
11523146 |
T |
|
| Q |
212 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttataggagtgcca |
311 |
Q |
| |
|
||| ||||||||||||| ||| |||||||||| || |||| || ||| | || ||| ||||| ||||| | || |||||||||| |||||||||| |
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| T |
11523145 |
cagaatctttgttaagaaagttaaaaaatgtctcccccattgcactttcataaagtgcaagatccttctcctctgagaaccatttcttagaggagtgcca |
11523046 |
T |
|
| Q |
312 |
c |
312 |
Q |
| |
|
| |
|
|
| T |
11523045 |
c |
11523045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 299
Target Start/End: Complemental strand, 34784539 - 34784252
Alignment:
| Q |
12 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
111 |
Q |
| |
|
|||||||||||||||||| || |||||||||| | |||||| |||||||| || || ||||||| | | || ||||||| | |||||||| | ||| |
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| T |
34784539 |
aacctgtggttgatcaaaaacagtgcatttgatctgaggaaatgcttcatgaataagctttgtgacagcaccggttccacccgcgacatcaacaagagat |
34784440 |
T |
|
| Q |
112 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
211 |
Q |
| |
|
|||||||| |||||||||| ||| ||| | |||||||| || || ||| |||||||||||||||||| |||||||||| ||||| | |||||| |
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|
| T |
34784439 |
tccaaaccctcaaacacattcttgttctcatgaagagcaagcttaaacattctagaatcagcagccatagcatcttgaaacaaactcaaagtaccagatt |
34784340 |
T |
|
| Q |
212 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttctt |
299 |
Q |
| |
|
||| ||||||||||||| | |||||| | |||||||| |||| | |||||| || | ||||||| |||||| ||| ||||||||| |
|
|
| T |
34784339 |
cagaatctttgttaagaaaatcccaatagttctctcctgttgcacactcaaaaagagtttgttccttatcctcattgaaccatttctt |
34784252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 34776327 - 34776100
Alignment:
| Q |
12 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
111 |
Q |
| |
|
|||||||||||||||||| || || ||||| |||| ||||||| |||||| ||||||||||| | ||| || | ||||||||||||||||| | |||| |
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|
| T |
34776327 |
aacctgtggttgatcaaaaacagtacatttaaggtgaggaaaaatttcatgaatgagttttgtaacaccaccagtaccacctccaacatcaacaagagac |
34776228 |
T |
|
| Q |
112 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
211 |
Q |
| |
|
|||||||| || || || | || ||||| ||| |||| || || ||| |||||||| |||||||| |||||||||||||||| | ||||| |
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|
| T |
34776227 |
tccaaaccctcgaaaacgcgtttattctcttggagaacaagcttaaacattctagaatcagatgccatagcatcttgaaacatactcaaagtactagatt |
34776128 |
T |
|
| Q |
212 |
cagtatctttgttaagatagtcccaaaa |
239 |
Q |
| |
|
||| ||||||||||||| | |||||||| |
|
|
| T |
34776127 |
cagaatctttgttaagaaaatcccaaaa |
34776100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 2390 - 2095
Alignment:
| Q |
12 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2390 |
aacctgtggttgatcaaatactgtgcatttgaggtcaggaaaagcttcatggatgagttttgtgaaacctcctcttccacctccaacatcaactatagac |
2291 |
T |
|
| Q |
112 |
tccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2290 |
cccaaaccttcaaacacatgattgcactcttttagagcaaggttgaagatttgagaatcagcagccatagcctcttgaaacatactcagttcatcagatt |
2191 |
T |
|
| Q |
212 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagaggctaagttccttgtcctcagtgagccatttcttataggagt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| || |||||| |
|
|
| T |
2190 |
cagtatctttgttaagatagtcccaaaatgtctctcctcttgcgctctcaaagagactgagttccttctcctcagtgagccatttcgtagaggagt |
2095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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