View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15449_high_30 (Length: 309)

Name: NF15449_high_30
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15449_high_30
NF15449_high_30
[»] chr7 (3 HSPs)
chr7 (12-293)||(45243499-45243780)
chr7 (12-293)||(45230238-45230513)
chr7 (18-293)||(45237762-45238031)
[»] chr1 (8 HSPs)
chr1 (169-293)||(29467841-29467965)
chr1 (13-126)||(29423096-29423208)
chr1 (171-293)||(29443382-29443504)
chr1 (13-126)||(29467979-29468091)
chr1 (44-126)||(29453503-29453585)
chr1 (203-293)||(29423256-29423346)
chr1 (68-126)||(29443520-29443578)
chr1 (171-293)||(29453365-29453487)
[»] chr2 (26 HSPs)
chr2 (171-293)||(9061202-9061324)
chr2 (188-293)||(9320958-9321063)
chr2 (171-293)||(8573566-8573688)
chr2 (188-293)||(9328575-9328680)
chr2 (37-293)||(9291776-9292018)
chr2 (174-293)||(9284251-9284370)
chr2 (69-293)||(10347650-10347866)
chr2 (171-293)||(9065654-9065776)
chr2 (57-126)||(8579704-8579773)
chr2 (188-293)||(10353085-10353190)
chr2 (196-293)||(10371842-10371939)
chr2 (234-293)||(10335866-10335925)
chr2 (171-293)||(9274480-9274602)
chr2 (68-129)||(9061355-9061416)
chr2 (188-293)||(11987548-11987653)
chr2 (188-293)||(12018949-12019054)
chr2 (232-293)||(16269109-16269170)
chr2 (233-293)||(12012607-12012667)
chr2 (228-293)||(7115703-7115768)
chr2 (174-269)||(9315981-9316076)
chr2 (32-126)||(9284389-9284483)
chr2 (44-126)||(9364489-9364571)
chr2 (68-129)||(8573722-8573783)
chr2 (248-293)||(12006179-12006224)
chr2 (14-87)||(12019126-12019198)
chr2 (14-126)||(10335688-10335799)
[»] chr3 (2 HSPs)
chr3 (171-293)||(37462448-37462570)
chr3 (171-217)||(39427599-39427645)
[»] chr4 (1 HSPs)
chr4 (196-293)||(26574842-26574942)
[»] scaffold0667 (1 HSPs)
scaffold0667 (173-275)||(4432-4534)
[»] chr8 (2 HSPs)
chr8 (232-293)||(41966766-41966827)
chr8 (18-122)||(41966911-41967014)


Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 12 - 293
Target Start/End: Original strand, 45243499 - 45243780
Alignment:
Q  12 ataggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45243499 ataggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttgttcactgttgagatca 45243598  T
Q  112 taccaaaacagcttcctaggatgtacatacaacacaagtaacttgcatgatttgttacaaacagaactttacttcgatcactccaataacataaaggcct 211  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  45243599 taccaaaacagcttcctaggatgtacatacaatacaagtaacttgcatgatttgttaccaacagaactttacttcgatcactcgaataacataaaggcct 45243698  T
Q  212 caaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttc 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45243699 caaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagaaccatattctttc 45243780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 293
Target Start/End: Original strand, 45230238 - 45230513
Alignment:
Q  12 ataggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatca 111  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| |||| ||||    
T  45230238 ataggtaaggatggtgatac-aaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacatgagtaacttgttcactcttgaaatca 45230336  T
Q  112 taccaaaacagcttcctaggatgtacatacaacacaagtaacttgcatgatttgttacaaacagaactttacttcgatcactccaataacataaaggcct 211  Q
    |||||||||||||||| ||||| |||     | ||||||||||||||||||||||| | ||||| ||||||| | |||||||| ||||||||||||| ||    
T  45230337 taccaaaacagcttccaaggatttac-----aaacaagtaacttgcatgatttgttgccaacagtactttacgttgatcactcgaataacataaaggtct 45230431  T
Q  212 caaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttc 293  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  45230432 caaagataccaaatgaaaattgaaccacgatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattctttc 45230513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 45237762 - 45238031
Alignment:
Q  18 aaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcataccaa 117  Q
    |||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| || |||| | ||||| |||||||||    
T  45237762 aaggaaggtggtac-aaggctttcagcacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcataccaa 45237860  T
Q  118 aacagcttcctaggatgtacatacaacacaagtaacttgcatgatttgttacaaacagaactttacttcgatcactccaataacataaaggcctcaaaga 217  Q
    |||| ||||||||||| | || |||      |  | |||||||||||||||| |||||||||||||||||||| ||  |||||||||||||||||||  |    
T  45237861 aacaacttcctaggatttgcagacat-----gctagttgcatgatttgttaccaacagaactttacttcgatcgcttgaataacataaaggcctcaacaa 45237955  T
Q  218 ttccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttc 293  Q
    || || |||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| ||||||||||||    
T  45237956 tttcagatgaaaattgaaacacgattcaactaaagtaaaaagtttacaccaactatctctagatccatattctttc 45238031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 169 - 293
Target Start/End: Complemental strand, 29467965 - 29467841
Alignment:
Q  169 caaacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacacca 268  Q
    ||||||||||  |||||| ||| ||| |||||| ||||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||||| |||    
T  29467965 caaacagaaccatacttccatcgctcgaataacctaaaggcctcaaagattccaactgtaaagtgaaacacgatctaaccaaagtaaaaagtttacgcca 29467866  T
Q  269 aatatctctagagccatattctttc 293  Q
    | |||||||| | ||||||||||||    
T  29467865 actatctctacatccatattctttc 29467841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 29423096 - 29423208
Alignment:
Q  13 taggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcat 112  Q
    |||| |||||||||||||| ||| ||| || ||||||||||  ||| || |||| ||||||||||||||||| || ||| || |||||| ||||||||||    
T  29423096 tagggaaggaaggtgatac-aagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcat 29423194  T
Q  113 accaaaacagcttc 126  Q
    ||||||||||||||    
T  29423195 accaaaacagcttc 29423208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 29443504 - 29443382
Alignment:
Q  171 aacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaa 270  Q
    ||||||||  |||||| ||| ||| |||||| ||||  |||||||| |  |||| | ||| |||||||||||| | ||||||||||||||||||||||      
T  29443504 aacagaaccatacttctatcgctcgaataacctaaaatcctcaaagctctcaaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccagc 29443405  T
Q  271 tatctctagagccatattctttc 293  Q
    |||||||| | ||||||||||||    
T  29443404 tatctctacatccatattctttc 29443382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 29468091 - 29467979
Alignment:
Q  13 taggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcat 112  Q
    |||| |||||||||| ||| ||| ||| || ||||||||||  ||||||| ||| |||||||||||| ||||||| |||  | |||||| ||||||||||    
T  29468091 tagggaaggaaggtggtac-aagacttccaacacaaatcatagcttcattcaaattaggaattccttcaacataattaacatgttcactcttgagatcat 29467993  T
Q  113 accaaaacagcttc 126  Q
    ||||||||| ||||    
T  29467992 accaaaacaacttc 29467979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 29453585 - 29453503
Alignment:
Q  44 cacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttc 126  Q
    ||||||||||  ||| || |||| |||||||||||| |||| || ||| || |||||| ||||||||||||||||||||||||    
T  29453585 cacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagatcataccaaaacagcttc 29453503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 293
Target Start/End: Original strand, 29423256 - 29423346
Alignment:
Q  203 taaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttc 293  Q
    |||| ||||||||| || |||| | ||  ||||||||||||   ||||||||||||||||||||||  |||||||| | ||||||||||||    
T  29423256 taaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccagctatctctacatccatattctttc 29423346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 29443578 - 29443520
Alignment:
Q  68 taggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttc 126  Q
    |||||||||||| ||||||| |||   ||||||| ||||||||||||||||||||||||    
T  29443578 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttc 29443520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 29453487 - 29453365
Alignment:
Q  171 aacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaa 270  Q
    ||||||||  |||||| ||| ||| |||||  |||||||| ||||| || |||| | ||| ||||||| ||||   ||||||||||||||| ||||||      
T  29453487 aacagaaccatacttccatcgctcgaataagctaaaggccacaaagttttcaaaggtaaaatgaaacatgattccgccaaagtaaaaagttcacaccagc 29453388  T
Q  271 tatctctagagccatattctttc 293  Q
    |||||||| | ||||||||||||    
T  29453387 tatctctacatccatattctttc 29453365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 9061324 - 9061202
Alignment:
Q  171 aacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaa 270  Q
    |||||||| |||| || ||||||  |||||||||| ||||||||| | |||||| |  |||||||||||||||||||||||||||||||||||||||||     
T  9061324 aacagaaccttacctccatcactagaataacataacggcctcaaaaagtccaaaggtgaattgaaacacgatttaaccaaagtaaaaagtttacaccaac 9061225  T
Q  271 tatctctagagccatattctttc 293  Q
    |||||||||| ||||| ||||||    
T  9061224 tatctctagatccatagtctttc 9061202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 188 - 293
Target Start/End: Original strand, 9320958 - 9321063
Alignment:
Q  188 atcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatat 287  Q
    ||||||| |||||| ||||||||||||||||| |||| | |||| | ||||||||||||||| ||||||||||||||||||| |||||||||| ||||||    
T  9320958 atcactcgaataacctaaaggcctcaaagatttcaaaggtaaatcgtaacacgatttaaccatagtaaaaagtttacaccaactatctctagaaccatat 9321057  T
Q  288 tctttc 293  Q
    ||||||    
T  9321058 tctttc 9321063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 8573688 - 8573566
Alignment:
Q  171 aacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaa 270  Q
    |||||||| ||||||| ||||||  |||||| |||||||||| ||||||  |||||   | |||||||||||||||| |||||||||||||||||||||     
T  8573688 aacagaaccttacttccatcactagaataacctaaaggcctcgaagatttaaaatgtggagtgaaacacgatttaacgaaagtaaaaagtttacaccaac 8573589  T
Q  271 tatctctagagccatattctttc 293  Q
    |||||||||| ||||||||||||    
T  8573588 tatctctagaaccatattctttc 8573566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 188 - 293
Target Start/End: Original strand, 9328575 - 9328680
Alignment:
Q  188 atcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatat 287  Q
    ||||||| |||||| ||||||||||||||||| |||| | |||| ||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||    
T  9328575 atcactcaaataacctaaaggcctcaaagatttcaaaggtaaatggaaacacgatttaaccatagtaaaaagtttacaccaactatctctatatccatat 9328674  T
Q  288 tctttc 293  Q
    | ||||    
T  9328675 tgtttc 9328680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 37 - 293
Target Start/End: Original strand, 9291776 - 9292018
Alignment:
Q  37 ctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttcctaggatgta 136  Q
    |||||| ||||||||||  ||||||  ||| |||||||||||| ||||||| ||| || |||||| || | |||||||||||||||||||||| ||| ||    
T  9291776 ctttcaacacaaatcatagcttcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttcctatgattta 9291875  T
Q  137 catacaacacaagtaacttgcatgatttgttacaaacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaa 236  Q
    | | ||||| ||        | ||| ||    | |||||||| ||||||| ||| ||  |||||||||||||||||||||||| ||||       ||||     
T  9291876 cctccaacaaaa--------cctgagttccgtccaacagaaccttacttccatccctagaataacataaaggcctcaaagatttcaaag------tgaac 9291961  T
Q  237 cacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttc 293  Q
    | ||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||    
T  9291962 cgcgatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattgtttc 9292018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 174 - 293
Target Start/End: Complemental strand, 9284370 - 9284251
Alignment:
Q  174 agaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatat 273  Q
    ||||| ||||| | ||||||  |||||| ||||||||||||||||| |||| | ||| |||| |  ||||||||||||||||||| |||||||||| |||    
T  9284370 agaaccttactaccatcactagaataacctaaaggcctcaaagatttcaaacgtaaagtgaaccgtgatttaaccaaagtaaaaattttacaccaactat 9284271  T
Q  274 ctctagagccatattctttc 293  Q
    ||||||| ||||||||||||    
T  9284270 ctctagaaccatattctttc 9284251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 69 - 293
Target Start/End: Original strand, 10347650 - 10347866
Alignment:
Q  69 aggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttcctaggatgtacatacaacacaagtaacttgcatgatttgtta 168  Q
    ||||||||||| ||||||| ||| || |||||| || | |||||||||||||||||||||| | ||||| | ||||| ||        |||||  | ||     
T  10347650 aggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttcctatgttgtacctccaacaaaa--------catgagctcttt 10347741  T
Q  169 caaacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacacca 268  Q
    | |||||||| ||||||| ||||||  |||||||||  ||||||||  ||| |||| | |||| ||||||||| | | ||| ||||||||||||||||||    
T  10347742 ccaacagaaccttacttccatcactagaataacatatgggcctcaacaatttcaaaggtaaatcgaaacacgactcagccatagtaaaaagtttacacca 10347841  T
Q  269 aatatctctagagccatattctttc 293  Q
    | |||||||| | ||||||||||||    
T  10347842 actatctctacatccatattctttc 10347866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 9065776 - 9065654
Alignment:
Q  171 aacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaa 270  Q
    |||||||| ||||||| |||||   |||||| || ||||||| ||| |  ||||||  ||| |||||| ||||| ||||||||||||||||||||||||     
T  9065776 aacagaaccttacttccatcaccggaataacctagaggcctcgaagctgtcaaatgtgaatggaaacaagatttgaccaaagtaaaaagtttacaccaac 9065677  T
Q  271 tatctctagagccatattctttc 293  Q
    |||||||||| ||||||||||||    
T  9065676 tatctctagatccatattctttc 9065654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 8579773 - 8579704
Alignment:
Q  57 ttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttc 126  Q
    |||||||||| ||||||||||||||||| |||||| || |||||| ||||||||||||||||||||||||    
T  8579773 ttcattgaaattaggaattccttgaacacaagtaacttcttcacttttgagatcataccaaaacagcttc 8579704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 293
Target Start/End: Original strand, 10353085 - 10353190
Alignment:
Q  188 atcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatat 287  Q
    ||||||| |||||| |||| |||||||||||| |||| | |||| |||| | |||||||||| ||||||||||||||||||| | |||||| | ||||||    
T  10353085 atcactcgaataacctaaaagcctcaaagattgcaaaggtaaatcgaaagaagatttaaccacagtaaaaagtttacaccaactctctctacatccatat 10353184  T
Q  288 tctttc 293  Q
    ||||||    
T  10353185 tctttc 10353190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 293
Target Start/End: Original strand, 10371842 - 10371939
Alignment:
Q  196 aataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttc 293  Q
    ||||||| || || ||||||||||||||| | |||   ||||  |||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  10371842 aataacacaagggtctcaaagattccaaaggtaaacccaaacttgatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattctttc 10371939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 10335866 - 10335925
Alignment:
Q  234 aaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttc 293  Q
    |||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||    
T  10335866 aaacacgatttaaccaaagtaaaatgtttacaccaactatctctacagccatattctttc 10335925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 293
Target Start/End: Original strand, 9274480 - 9274602
Alignment:
Q  171 aacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaa 270  Q
    |||||||| ||||||| ||||||  |||||||||||||||| |||  ||||||||  | |  |||||| | ||  | ||||||||||||||||||||||     
T  9274480 aacagaaccttacttccatcactagaataacataaaggcctaaaaatttccaaatctacaaggaaacaaggttccatcaaagtaaaaagtttacaccaac 9274579  T
Q  271 tatctctagagccatattctttc 293  Q
    ||||| |||| ||||||||||||    
T  9274580 tatctgtagaaccatattctttc 9274602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 9061416 - 9061355
Alignment:
Q  68 taggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttccta 129  Q
    |||||||||||| ||||||| ||| || |||||| |||||||||||||||||||||||||||    
T  9061416 taggaattccttcaacataactaacttgttcactcttgagatcataccaaaacagcttccta 9061355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 293
Target Start/End: Complemental strand, 11987653 - 11987548
Alignment:
Q  188 atcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatat 287  Q
    ||||||| ||||||  ||||| |||||||||| |||| | |||  |||||||||||  | ||| || ||||||||||||||| |||||||| | ||||||    
T  11987653 atcactcgaataacccaaagggctcaaagatttcaaaggtaaaacgaaacacgattccatcaatgtgaaaagtttacaccaactatctctacatccatat 11987554  T
Q  288 tctttc 293  Q
    ||||||    
T  11987553 tctttc 11987548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 293
Target Start/End: Complemental strand, 12019054 - 12018949
Alignment:
Q  188 atcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatat 287  Q
    ||||||| |||||| |||||| |||||| ||   ||| | |||  |||||||||||  | |||||||||||||||||||||| |||||||| | ||||||    
T  12019054 atcactcgaataacctaaagggctcaaaaatctaaaaggtaaaacgaaacacgattccatcaaagtaaaaagtttacaccaactatctctacatccatat 12018955  T
Q  288 tctttc 293  Q
    ||||||    
T  12018954 tctttc 12018949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 16269109 - 16269170
Alignment:
Q  232 tgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttc 293  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||||| | ||||| ||||||    
T  16269109 tgaaacacgatttaaccaaggtaaaaagtttgcaccaactatctctatatccatactctttc 16269170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 12012667 - 12012607
Alignment:
Q  233 gaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttc 293  Q
    |||||||||||  |||||||||||||||||||||||| ||||| || | ||||||||||||    
T  12012667 gaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttc 12012607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 7115768 - 7115703
Alignment:
Q  228 aaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttc 293  Q
    |||| ||||||||| |||||||| |||||||||||||||||  | |||||||| ||||||| ||||    
T  7115768 aaatcgaaacacgaattaaccaatgtaaaaagtttacaccagctgtctctagatccatattgtttc 7115703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 269
Target Start/End: Original strand, 9315981 - 9316076
Alignment:
Q  174 agaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaa 269  Q
    ||||| |||||||  |||||  |||||| ||||||| ||||| | | ||||   ||| ||||||| || |||||||||||||||||||||||||||    
T  9315981 agaaccttacttccgtcactagaataacctaaaggcttcaaaaaattcaaagataaagtgaaacatgaattaaccaaagtaaaaagtttacaccaa 9316076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 9284483 - 9284389
Alignment:
Q  32 caaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttc 126  Q
    |||| |||||| ||||||||||  ||||||  ||| |||||||||||| ||||||| ||| ||  ||||| || | ||||||||||| |||||||    
T  9284483 caagactttcaacacaaatcatagcttcatccaaattaggaattccttcaacataaataacttgctcactcttcaaatcataccaaaccagcttc 9284389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 9364489 - 9364571
Alignment:
Q  44 cacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttc 126  Q
    ||||||||||  ||||||| | | ||||||||||| |||||  |||||  | |||||| |||||||| |||||||||||||||    
T  9364489 cacaaatcatagcttcattcatattaggaattcctggaacactagtaacgttttcactcttgagatcgtaccaaaacagcttc 9364571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 8573783 - 8573722
Alignment:
Q  68 taggaattccttgaacataagtaagttattcactgttgagatcataccaaaacagcttccta 129  Q
    |||||||||||| ||||||| | | || |||||| || | ||||||||||||||||||||||    
T  8573783 taggaattccttcaacataactgacttgttcactcttcaaatcataccaaaacagcttccta 8573722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 12006224 - 12006179
Alignment:
Q  248 caaagtaaaaagtttacaccaaatatctctagagccatattctttc 293  Q
    |||||||||||||||||||||| ||||| || | ||||||||||||    
T  12006224 caaagtaaaaagtttacaccaactatctttacaaccatattctttc 12006179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 12019198 - 12019126
Alignment:
Q  14 aggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataa 87  Q
    |||||||||||||| ||| ||| ||| || ||||||||||  |||||| |||| |||||||||||| |||||||    
T  12019198 aggtaaggaaggtggtac-aagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataa 12019126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 10335688 - 10335799
Alignment:
Q  14 aggtaaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcata 113  Q
    ||||||||||||||| || ||| ||| || ||||||||||    ||||  ||| |||||||||||| ||||||| ||| || |||||| || | ||||||    
T  10335688 aggtaaggaaggtgaaac-aagacttccaacacaaatcatagtgtcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcata 10335786  T
Q  114 ccaaaacagcttc 126  Q
    |||||||| ||||    
T  10335787 ccaaaacaacttc 10335799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 171 - 293
Target Start/End: Original strand, 37462448 - 37462570
Alignment:
Q  171 aacagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaa 270  Q
    |||| ||| ||||||| ||||||  |||||||||||||||||||||||| |||| |  || |||||||||||||| ||| |||| ||||||||||||||     
T  37462448 aacaaaaccttacttccatcactagaataacataaaggcctcaaagatttcaaaggtgaagtgaaacacgatttatccacagtacaaagtttacaccaac 37462547  T
Q  271 tatctctagagccatattctttc 293  Q
    |||||||||| ||||||||||||    
T  37462548 tatctctagatccatattctttc 37462570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 39427599 - 39427645
Alignment:
Q  171 aacagaactttacttcgatcactccaataacataaaggcctcaaaga 217  Q
    |||||||||||||||| ||||||  |||||||||||||| |||||||    
T  39427599 aacagaactttacttctatcactggaataacataaaggcttcaaaga 39427645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 196 - 293
Target Start/End: Original strand, 26574842 - 26574942
Alignment:
Q  196 aataacataaaggcctcaaagattccaaatgaaaatt---gaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattcttt 292  Q
    |||||| |||| ||||||||||||||| | | ||||    ||||||||||||||||| ||||||||||||||||||| |||||||| | |||||||||||    
T  26574842 aataacctaaaagcctcaaagattccacaggtaaatcatcgaaacacgatttaaccacagtaaaaagtttacaccaactatctctacatccatattcttt 26574941  T
Q  293 c 293  Q
    |    
T  26574942 c 26574942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 275
Target Start/End: Original strand, 4432 - 4534
Alignment:
Q  173 cagaactttacttcgatcactccaataacataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaata 272  Q
    |||||| ||||||| ||||||  ||||||||||||| ||| |||||| ||||||  || ||| ||||||||| | || ||||||||||||||||||| ||    
T  4432 cagaaccttacttccatcactagaataacataaaggactcgaagatttcaaatgtgaagtgacacacgatttcatcatagtaaaaagtttacaccaacta 4531  T
Q  273 tct 275  Q
    |||    
T  4532 tct 4534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 41966827 - 41966766
Alignment:
Q  232 tgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttc 293  Q
    ||||||| |||||||||||||||||||||||||||||  |||||||||| | ||||||||||    
T  41966827 tgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttc 41966766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 41967014 - 41966911
Alignment:
Q  18 aaggaaggtgataccaaggctttcagcacaaatcattacttcattgaaagtaggaattccttgaacataagtaagttattcactgttgagatcataccaa 117  Q
    |||||||||| ||| ||| ||| || |||||| |||  ||||||  ||| |||||||||||| ||||||||||| || |||||| || | ||||||||||    
T  41967014 aaggaaggtggtac-aagacttccaacacaaaacatggcttcatcaaaattaggaattccttcaacataagtaatttgttcactcttcaaatcataccaa 41966916  T
Q  118 aacag 122  Q
    |||||    
T  41966915 aacag 41966911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University