View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_high_35 (Length: 290)
Name: NF15449_high_35
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 293030 - 293308
Alignment:
| Q |
11 |
cagagagcacagattcccaactcgccatggcgagttctagctcacccggcgacttgtgacaatctagaattctgcagaaaacgtatttttgcataaaagc |
110 |
Q |
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| T |
293030 |
cagagagcacagattcccaactcgccatggcgagttctagctcacccggcgacttgtgacagtctagaattctgcagaaaacgtatttttgcataaaagc |
293129 |
T |
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| Q |
111 |
ctcaatttcaagcatcataaggtacatggcacttccagaacac----nnnnnnncagtaggaattataatacatgacattattaatatgttcttga---- |
202 |
Q |
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| T |
293130 |
ctcaattttaagcatcataaggtacctagcacttccagaacacaaaaaaaaaaacagtaggaattataatacatgacattattaacatgttcttgacgat |
293229 |
T |
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| Q |
203 |
---------aaaggggttctctacacacctatttcataaactatcacaacatgattcctcatataagtacacacaaccc |
272 |
Q |
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| T |
293230 |
atatggtacaaaggggttctctacacacctatttcataaactatcacaacatgattcctcatataagtacacacaaccc |
293308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 153
Target Start/End: Original strand, 37985330 - 37985464
Alignment:
| Q |
22 |
gattcccaactcgccatggcgagttctagctcacccggcgacttgtgacaatctagaattctgcagaaaacgtatttttgcat---aaaagcctcaattt |
118 |
Q |
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| T |
37985330 |
gattcccaactcgccatggcgagttctagctcgcccgacgagttgtgacagtccagaattctgcagaaaacgtatttttgcataaaaaaaacctcaattt |
37985429 |
T |
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| Q |
119 |
caagcatcataaggtacatggcacttccagaacac |
153 |
Q |
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| T |
37985430 |
caagcatcataaggtacctgatacttccagaacac |
37985464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 25239484 - 25239533
Alignment:
| Q |
41 |
cgagttctagctcacccggcgacttgtgacaatctagaattctgcagaaa |
90 |
Q |
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| T |
25239484 |
cgagttctagctcgcccggcgagttgtgacagtccagaattctgcagaaa |
25239533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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