View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_high_36 (Length: 286)
Name: NF15449_high_36
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_high_36 |
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| [»] chr2 (5 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 286
Target Start/End: Complemental strand, 19479747 - 19479453
Alignment:
| Q |
12 |
gataattcttgtgatccaaaggaggagaaaccagaatcacagcaggattttcattcggatgaagataataaggatttgcagaattggtagagaaatcagt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19479747 |
gataattcttgtgatccaaaggaggagaaaccagaatcacagcaggattttcattcggatgaagataataaggatttgcagaattggtagagaaatcagt |
19479648 |
T |
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| Q |
112 |
gtaggtagccatgatcaagtactcaaaattgattcgaaacacaagagaaattgaatcgaaaattgaacaggnnnnnnnnntgaacaatggcta------- |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19479647 |
gtaggtagccatgatcaagtactcaaaattgattcgaaacacaagagaaattgaatcgaaaattgaacaggaaaaaaaaatgaacaatggctaccagagc |
19479548 |
T |
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| Q |
205 |
-------------ccatattaaaacactaaactttgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaagta |
286 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19479547 |
aattgctctgataccatattaaaacactgaactttgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaagta |
19479453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 11335918 - 11335748
Alignment:
| Q |
12 |
gataattcttgtgatccaaaggaggagaaaccagaatcacagcaggattttcattcggatgaagataataaggatttgcagaattggtagagaaatcagt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11335918 |
gataattcttgtgatccaaaggaggagaaaccagaatcacagccggattttcattcggatgaagataataaggatttgcagaattggtagagaaatcagt |
11335819 |
T |
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| Q |
112 |
gtaggtagccatgatcaagtactcaaaattgattcgaaacacaagagaaattgaatcgaaaattgaacagg |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
11335818 |
gtaggtagccatgatcaagtactcaaaattgattcgaaacacaagagaaatcgaattgaaaattgaacagg |
11335748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 203 - 283
Target Start/End: Complemental strand, 11335706 - 11335626
Alignment:
| Q |
203 |
taccatattaaaacactaaactttgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaa |
283 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11335706 |
taccatattaaaacactgaactttgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaa |
11335626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 208 - 285
Target Start/End: Complemental strand, 19484161 - 19484084
Alignment:
| Q |
208 |
tattaaaacactaaactttgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaagt |
285 |
Q |
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||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19484161 |
tattaaaactctgaactctgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaagt |
19484084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 11338064 - 11337985
Alignment:
| Q |
208 |
tattaaaacactaaactttgaataaatggaaagtaattttcattattgagtgattagaatagtga-ggcacatctaagta |
286 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11338064 |
tattaaaacactgaactttgaataaatggaaggtaattttcattattgagtgattagaatagtgagggcacatctaagta |
11337985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 12 - 286
Target Start/End: Complemental strand, 19739217 - 19738923
Alignment:
| Q |
12 |
gataattcttgtgatccaaaggaggagaaaccagaatcacagcaggattttcattcggatgaagataataaggatttgcagaattggtagagaaatcagt |
111 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19739217 |
gataattcttgtgattcaaaggaggagaaaccagaatcacagccggattttcattcggatgaagatagtaaggatttgcagaattggtagagaaatcagt |
19739118 |
T |
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| Q |
112 |
gtaggtagccatgatcaagtactcaaaattgattcgaaacacaagagaaattgaatcgaaaattgaacaggnnnnnnnnntgaacaatggcta------- |
204 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||| |||||| ||||||||||||| |
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| T |
19739117 |
gtaggtagccatgatcaagtactcaaaattgattcaaaacacaagagaaatcgaatcaaaaattaaacaggaaaaaaaaatgaacaatggctaccagagc |
19739018 |
T |
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| Q |
205 |
-------------ccatattaaaacactaaactttgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaagta |
286 |
Q |
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| T |
19739017 |
aattgctctaataccatattaaaacactgaactttgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaagta |
19738923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 19743651 - 19743573
Alignment:
| Q |
208 |
tattaaaacactaaactttgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaagta |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19743651 |
tattaaaacactaaactttgaataaatggaaagtaatttttattattgagtgattagaatagtgaggcacatctaagta |
19743573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 3278663 - 3278833
Alignment:
| Q |
12 |
gataattcttgtgatccaaaggaggagaaaccagaatcacagcaggattttcattcggatgaagataataaggatttgcagaattggtagagaaatcagt |
111 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3278663 |
gataattcttgtgatccaaaggaggagaaaccagaatcacagccggattttcattcggatgaagataataaggatttgcagaattggtagagaaatcagt |
3278762 |
T |
|
| Q |
112 |
gtaggtagccatgatcaagtactcaaaattgattcgaaacacaagagaaattgaatcgaaaattgaacagg |
182 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3278763 |
gtaggtagctatgatcaagtactcaaaattgattcgaaacacaagagaaattgaatcgaaaattgaacagg |
3278833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 3278875 - 3278954
Alignment:
| Q |
206 |
catattaaaacactaaactttgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaagt |
285 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3278875 |
catattaaaacactgaactttgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaagt |
3278954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 3277230 - 3277308
Alignment:
| Q |
208 |
tattaaaacactaaactttgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaagta |
286 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3277230 |
tattaaaacacggaactttgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaagta |
3277308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 51766715 - 51766635
Alignment:
| Q |
206 |
catattaaaacactaaactttgaataaatggaaagtaattttcattattgagtgattagaatagtgaggcacatctaagta |
286 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| |
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| T |
51766715 |
catattaaaacacttagctttgaataaatggaaagtaattttcattattgagtaagtagaatagtgaggcacacctaagta |
51766635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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