View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_high_39 (Length: 278)
Name: NF15449_high_39
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 5 - 268
Target Start/End: Complemental strand, 25244504 - 25244241
Alignment:
| Q |
5 |
atcgatatttctaaattcgtaaatgcgagtacgatgatcgggaaatagaaattcctctcctatgcagagttgggttgctgaagctgacgtggacacaaga |
104 |
Q |
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| T |
25244504 |
atcgatatctctaaatcggtaaatgcgagtacgatgaccgggaaatagaaattcctctcctatgcagagttgggttgctgaagctgacgtggacacaaga |
25244405 |
T |
|
| Q |
105 |
acacacgtaacccatacttcataaagagtgtaagagacattttctgttgaaccttatgaccgggaacaggcaaaagccggtaacgaatcaaaacagcagc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
25244404 |
acacacgtaacccatacttcataaagagtgtaagagacattttttgttgaaccttatgaccgggaaccggtaaaagccggtaacgaatcaaaacagcagc |
25244305 |
T |
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| Q |
205 |
agcaacagatttcatttgaaggtaagccaaatccttccctaaacaagtcctcggtccagtatta |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25244304 |
agcaacagatttcatttgaaggtaagccaaatccttccctaaacaagtcctcggtccagcatta |
25244241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 134 - 268
Target Start/End: Complemental strand, 29669543 - 29669409
Alignment:
| Q |
134 |
gtaagagacattttctgttgaaccttatgaccgggaacaggcaaaagccggtaacgaatcaaaacagcagcagcaacagatttcatttgaaggtaagcca |
233 |
Q |
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||||||||||||||||| | || |||||||||||| ||||| ||||||||||| | | |||||||||||| || || |||||||| | |||||||| |
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| T |
29669543 |
gtaagagacattttctgctccacaacatgaccgggaaccggcaatagccggtaacgtaatagaacagcagcagccactgacttcatttgcaagtaagcca |
29669444 |
T |
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| Q |
234 |
aatccttccctaaacaagtcctcggtccagtatta |
268 |
Q |
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| T |
29669443 |
aatcctttcccaaacaagttctaggtccagcatta |
29669409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 11315653 - 11315601
Alignment:
| Q |
197 |
acagcagcagcaacagatttcatttgaaggtaagccaaatccttccctaaaca |
249 |
Q |
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||||||||||||| ||| ||||| |||||||| ||||| |||||||| ||||| |
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| T |
11315653 |
acagcagcagcaatagacttcatctgaaggtatgccaagtccttccccaaaca |
11315601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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