View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_high_4 (Length: 687)
Name: NF15449_high_4
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 311 - 681
Target Start/End: Complemental strand, 32218790 - 32218420
Alignment:
| Q |
311 |
ggttacatgataagatacgcatgcatcgtttaatacttagaaaggatgaccagtttagtgtccttattaataaatgaagatgctaaaaagaaatcagtga |
410 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
32218790 |
ggttacatgataagatacgcatgcatcatttaatacttagaaaggatgacaagtttagtgtccttattaataaatcaagatgctaaaaaaaaatcagtga |
32218691 |
T |
|
| Q |
411 |
tatatcttttcatttgaataagcctccaacagcttttttaacaccatcaagcacaccaccttcttcggatttaggaggctcctctggtgtggaatgaaca |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32218690 |
tatatcttttcatttgaataagcctccaacagcttttttaacaccatcaagcacaccaccttcttcggatttaggaggctcctctggtgtggaatgaaca |
32218591 |
T |
|
| Q |
511 |
tgatcagcagccctgtcaacgtgctcaactacggtcttcttagcctcccctgcagcagttgccaccttctcagattgttgccccacagttgtctgtgctg |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32218590 |
tgatcagcagccctgtcaacgtgctcaactacggtcttcttagccttctctgcagcagttgccaccttctcagattgttgccccacagttgtctgtgctg |
32218491 |
T |
|
| Q |
611 |
attctgctgccacctttgcactccccaaaatctcacttggtagaaacttatttggttctccactttctgcc |
681 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32218490 |
attctgctgccacctttgcactccccaaaacctcacttggtagaaacttatttggttctccactttctgcc |
32218420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 418 - 671
Target Start/End: Complemental strand, 32220324 - 32220071
Alignment:
| Q |
418 |
tttcatttgaataagcctccaacagcttttttaacaccatcaagcacaccaccttcttcggatttaggaggctcctctggtgtggaatgaacatgatcag |
517 |
Q |
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| T |
32220324 |
tttcatttgaataagcctccaacagtctttttaacaccatcaagcacaccagcttcttcggttttggcaggctccacaggtttagaatgaacataatcag |
32220225 |
T |
|
| Q |
518 |
cagccctgtcaacgtgctcaactacggtcttcttagcctcccctgcagcagttgccaccttctcagattgttgccccacagttgtctgtgctgattctgc |
617 |
Q |
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||||||| |||| ||||| || || ||||||||| | || ||||||||||||| ||||| ||| ||||| | ||||||||||||||||||||||||| |
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| T |
32220224 |
cagccctatcaatttgctctacaactgtcttcttaacaccctctgcagcagttgctaccttttcaccttgtttcaccacagttgtctgtgctgattctgc |
32220125 |
T |
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| Q |
618 |
tgccacctttgcactccccaaaatctcacttggtagaaacttatttggttctcc |
671 |
Q |
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| T |
32220124 |
tgccacctttgcactccccaaaacctcgcttggtagaaacttatttggttctcc |
32220071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 108 - 257
Target Start/End: Complemental strand, 32218985 - 32218836
Alignment:
| Q |
108 |
aggtgaattatctcctcgtacagattttttatacgcatagatgagttagaaatcgaaccctaactaaatatttaaagggtccaaatcccttattacttgt |
207 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32218985 |
aggtggattatctcctcgtacagattttttatacgcatagatgagttagaaatcgaaccctaactaaatatttaaagggtccaaatcccttattacttga |
32218886 |
T |
|
| Q |
208 |
actaatatattgttattaagttaaatacattttttagtatatgtgaaagt |
257 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
32218885 |
actaatatattgttcgtaagttaaatatattttttagtatatgtgaaagt |
32218836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 32219048 - 32219006
Alignment:
| Q |
19 |
attgatacgaaatttcaccgccgctaagtgatggttaatctcc |
61 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
32219048 |
attgatacgaaatttcaccgccgctaagcgatgattaatctcc |
32219006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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