View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_high_40 (Length: 275)
Name: NF15449_high_40
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_high_40 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 23289261 - 23289518
Alignment:
| Q |
1 |
ttgaaattccaacttatagtatatagatatattgcagttgtgtaatttaaccacaatttctgacaccacatctcaacaccgaatatcatcgagtgtggac |
100 |
Q |
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| T |
23289261 |
ttgaaattccaacttatagtatatagatatattgcatttgtgtaatttaaacacaatttctgacaccacgtctcaacaccaaatatcatcgagtgtggac |
23289360 |
T |
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| Q |
101 |
ttcggtgtcgaagagagaacaaacatttgatgatagagaaaaaacaatttaaaactcaatccgtataaacatacggtacttgtgtcctaaactgtgtaaa |
200 |
Q |
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| T |
23289361 |
ttcggtgtcgaagagagaacaaacatttgatgatagagaaaaaacaatttaaaactcaatccgtataaacatacggtacttgtgtcctaaactgtgtcaa |
23289460 |
T |
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| Q |
201 |
caaaacatttctctacctaaaatccataccactaacaaaaattgtagtacaaacattt |
258 |
Q |
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| T |
23289461 |
caaaacatttctctacctaaaatccataccactaacaaaaattgtagtacagacattt |
23289518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 23282924 - 23283176
Alignment:
| Q |
8 |
tccaacttatagtatatagatatattgcagttgtgtaatttaaccacaatttctgacaccacatctcaacaccgaatatcatcgagtgtggacttcggtg |
107 |
Q |
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| T |
23282924 |
tccaacttgttgtatatagatatattgcagttgtgtaatttaaacacaatttctgacaccacgtctcaacaccgtatatcatcgagtgtggacttcggtg |
23283023 |
T |
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| Q |
108 |
tcgaagagagaacaaacatttgatgatagagaaaaaacaatttaaaactc--aatccgtataaacatacggtacttgtgtcctaaactgtgtaaacaaaa |
205 |
Q |
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| T |
23283024 |
tcaaaaaatgaacaaacatttgaagatagagaaaaaacaatttaaaacacaaaatccgtataaatatacggtacctgtgtcctaaactgtgcaaacaaaa |
23283123 |
T |
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| Q |
206 |
catttctctacctaaaatccataccactaacaaaaattgtagtacaaacattt |
258 |
Q |
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| T |
23283124 |
catttccctacataaaatccataccactaacaaaaattgtagtatagacattt |
23283176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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