View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_high_42 (Length: 271)
Name: NF15449_high_42
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_high_42 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 39519598 - 39519846
Alignment:
| Q |
1 |
attgagaaaagtaagtaattaaaccatttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggaagaagctttccaagataacctggctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39519598 |
attgagaaaagtaagtaattaaaccatttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggaagaagctttccaagataacctggctg |
39519697 |
T |
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| Q |
101 |
caatggggtaaaaatgttgaaagaaattgaaacagtaacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaactggaaaatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39519698 |
caatggggtaaaaatgttgaaagaaattgaaacaataacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaactggaaaatttt |
39519797 |
T |
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| Q |
201 |
caatggttttgtagtaatcagcaatgaaatcaaccatcttatgaccttg |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39519798 |
caatggttttgtagtaatcagcaatgaaatcaaccatcatatgaccttg |
39519846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 39532056 - 39532304
Alignment:
| Q |
1 |
attgagaaaagtaagtaattaaaccatttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggaagaagctttccaagataacctggctg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39532056 |
attgagaaaagtaagtaattaaaccatttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggtagaagctttccaagataacctggctg |
39532155 |
T |
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| Q |
101 |
caatggggtaaaaatgttgaaagaaattgaaacagtaacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaactggaaaatttt |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
39532156 |
caatggggtaaaaatattgaaagaaattgaaacagtaacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaacagggaaatttt |
39532255 |
T |
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| Q |
201 |
caatggttttgtagtaatcagcaatgaaatcaaccatcttatgaccttg |
249 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39532256 |
caattgttttgtagtaatcagcaatgaaatcaaccatcatatgaccttg |
39532304 |
T |
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