View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_high_43 (Length: 261)
Name: NF15449_high_43
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 22649382 - 22649162
Alignment:
| Q |
19 |
ggattagaatttagaggatggaaaacacttttttcatatttatttattcataattttaactttagtaacaacactatttaacnnnnnnnnnggaaaacac |
118 |
Q |
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| T |
22649382 |
ggattagaatttagaggatggaaaacatttttttcatatttatttattcataattttaactttagtaaca---ctatttaacaaaaaaaa-ggtaaacac |
22649287 |
T |
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| Q |
119 |
ttcattattgtacctccactgccttctctt---tccttgtttcttccacctacccagaaatccactcttgcttcttcttcttttctcatctactgcctta |
215 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22649286 |
ttcattattgtacctccactgccttctcttctttccttgtttcttccacctacccagaaatccattcttgcttcttcttcttttctcatctactgcctta |
22649187 |
T |
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| Q |
216 |
atcatggctgcaaataccccatgca |
240 |
Q |
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||||||| ||||||||||||||||| |
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| T |
22649186 |
atcatggatgcaaataccccatgca |
22649162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 38688344 - 38688124
Alignment:
| Q |
19 |
ggattagaatttagaggatggaaaacacttttttcatatttatttattcataattttaactttagtaacaacactatttaacnnnnnnnnnggaaaacac |
118 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| |
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| T |
38688344 |
ggattagaatttagaggatggaaaacatttttttcatatttatttattcataattttaactttagtaaca---ctatttaacaaaaaaaa-ggtaaacac |
38688249 |
T |
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| Q |
119 |
ttcattattgtacctccactgccttctctt---tccttgtttcttccacctacccagaaatccactcttgcttcttcttcttttctcatctactgcctta |
215 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38688248 |
ttcattattgtacctccactgccttctcttctttccttgtttcttccacctacccagaaatccattcttgcttcttcttcttttctcatctactgcctta |
38688149 |
T |
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| Q |
216 |
atcatggctgcaaataccccatgca |
240 |
Q |
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||||||| ||||||||||||||||| |
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| T |
38688148 |
atcatggatgcaaataccccatgca |
38688124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 245
Target Start/End: Original strand, 40647908 - 40648136
Alignment:
| Q |
23 |
tagaatttagaggatggaaaacacttttttcatatttatttattcataattttaactttagtaacaacactattta---acnnnnnnnnnggaaaacact |
119 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| | | |||||||||| |
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| T |
40647908 |
tagaatttagaggatagaaaacacttttctcatatttatttattcataattttaactttagtaacaatactaaacaaataaaaaaataaaggaaaacact |
40648007 |
T |
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| Q |
120 |
tca--ttatt-gtacctccactgccttctctttccttgtttcttccacctacccagaaatccactcttgcttcttcttcttttctcatctactgccttaa |
216 |
Q |
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||| ||||| ||| |||| |||||||||||||| || |||||||||||||||| ||| ||| | | ||||||||| |||||||| ||| |||||| |
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| T |
40648008 |
tcattttattagtatctccgttgccttctctttccatgcttcttccacctacccaaaaactcacccacgtttcttcttcatttctcatatacaaccttaa |
40648107 |
T |
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| Q |
217 |
tcatggctgcaaataccccatgcagcatc |
245 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
40648108 |
tcatggctgcaaataccccatgcaccatc |
40648136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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