View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15449_high_5 (Length: 598)

Name: NF15449_high_5
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15449_high_5
NF15449_high_5
[»] scaffold0009 (2 HSPs)
scaffold0009 (195-580)||(101469-101855)
scaffold0009 (20-98)||(101298-101382)
[»] chr1 (1 HSPs)
chr1 (320-450)||(45784912-45785042)
[»] chr7 (8 HSPs)
chr7 (461-531)||(10281348-10281418)
chr7 (323-435)||(10281461-10281577)
chr7 (96-170)||(47544116-47544190)
chr7 (198-249)||(47528128-47528179)
chr7 (322-403)||(28638543-28638624)
chr7 (184-252)||(47544247-47544316)
chr7 (320-395)||(503625-503700)
chr7 (480-528)||(48014451-48014499)
[»] scaffold0117 (1 HSPs)
scaffold0117 (461-530)||(13593-13662)
[»] scaffold0019 (1 HSPs)
scaffold0019 (325-450)||(64236-64361)


Alignment Details
Target: scaffold0009 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 195 - 580
Target Start/End: Original strand, 101469 - 101855
Alignment:
Q  195 tcttaatgcctaatgacattgcctatcaggatgctttctaatagggaatcggctaaactctcacgaaatagaaagcaaggtcgggt-gttgatgaatgct 293  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||  | |||||||||||||    
T  101469 tcttaacgcctaatgacattgcctctcaggatgctttctaatagggaatcggctaaactctcaggaaatagaaagcaagctcgtattgttgatgaatgct 101568  T
Q  294 ataaatctttggggctataaatcatttggatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggtt 393  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  101569 ataaatctttggggccataaatcatttggatatgaatgctagctatggtggatttgcatctgctttgattaagaatcctgtttgggttatgaacgtggtt 101668  T
Q  394 cctgtcgaggttaaggttgatacacttggagcaatatatgaaaggggattgattggatgataccataattgaaccatttatcacatattaaacaatattc 493  Q
    | ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  101669 cttgtcgaggttaaggttgatactcttcgagcaatatatgaaaggggattgattggatgataccatgattgaacaatttatcacatattaaacaatattc 101768  T
Q  494 aatgttatatttccattgtgatttccttgattaattaaacaattgtgttttgattattttgtgttcacaattgttcctcttctgggt 580  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  101769 aatgttatatttccattgtgatttccttgattaattaaacaattgtgctttgattattttgtgttcacaattgttcctctcctgggt 101855  T

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Target: scaffold0009; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 101298 - 101382
Alignment:
Q  20 agacatttaatccttttgaacttggaaatatgttgttac------gtcaacgacaagtggatccttaggcgaagaggaggcttat 98  Q
    |||||| | |||||| ||||||||||||  |||||||||      |||||||||||||||||||| ||||||||| |||||||||    
T  101298 agacatctgatccttctgaacttggaaacctgttgttacaaccaggtcaacgacaagtggatcctcaggcgaagatgaggcttat 101382  T

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Target: chr1 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 320 - 450
Target Start/End: Complemental strand, 45785042 - 45784912
Alignment:
Q  320 tggatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggttcctgtcgaggttaaggttgatacact 419  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||| |||||||||||| ||| ||||||||| || ||    
T  45785042 tggatatgaatgctaacttgggtggatttgcatctgctttagttaagaatcctgtttgggttatgaatgtggttcctgtccaggctaaggttgacaccct 45784943  T
Q  420 tggagcaatatatgaaaggggattgattgga 450  Q
    ||| |||||||||||||||||| ||||||||    
T  45784942 tggggcaatatatgaaaggggactgattgga 45784912  T

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Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 461 - 531
Target Start/End: Complemental strand, 10281418 - 10281348
Alignment:
Q  461 attgaaccatttatcacatattaaacaatattcaatgttatatttccattgtgatttccttgattaattaa 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10281418 attgaaccatttatcacatattaaacaatattcaatgttatattttcattgtgatttccttgattaattaa 10281348  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 323 - 435
Target Start/End: Complemental strand, 10281577 - 10281461
Alignment:
Q  323 atatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttat----gaacgtggttcctgtcgaggttaaggttgatacac 418  Q
    |||||||||||||||  ||||||||||||| ||||||||||||||| |  |||||||||||    |||||||||||||||| | | ||||||||||||||    
T  10281577 atatgaatgctaactacggtggatttgcatttgctttgattaagaaccatgtttgggttatatatgaacgtggttcctgtccatgctaaggttgatacac 10281478  T
Q  419 ttggagcaatatatgaa 435  Q
    |||||||||||||||||    
T  10281477 ttggagcaatatatgaa 10281461  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 96 - 170
Target Start/End: Original strand, 47544116 - 47544190
Alignment:
Q  96 tatgaatggagacaataacgcttctaatgcaaaacgagttaagaggtaacaatattctctgagttcaatatgttt 170  Q
    ||||||| ||||||||||| ||||  ||||||||||| ||||||||||||||||||||  |||||||||||||||    
T  47544116 tatgaatagagacaataacccttccgatgcaaaacgacttaagaggtaacaatattctaggagttcaatatgttt 47544190  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 47528128 - 47528179
Alignment:
Q  198 taatgcctaatgacattgcctatcaggatgctttctaatagggaatcggcta 249  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  47528128 taatgcctaatgacattgcctttcaggatgctctctaatagggaatcagcta 47528179  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 322 - 403
Target Start/End: Complemental strand, 28638624 - 28638543
Alignment:
Q  322 gatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggttcctgtcgagg 403  Q
    |||||||||||| ||||||| ||||||||| ||||  ||||| |  ||||||||||||| ||||| || ||||| |||||||    
T  28638624 gatatgaatgcttacttgggaggatttgcagctgcaatgattgatgatccagtttgggtcatgaatgttgttccggtcgagg 28638543  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 47544247 - 47544316
Alignment:
Q  184 tccaaacatggtcttaatgcctaatgacattgcc-tatcaggatgctttctaatagggaatcggctaaac 252  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||||    ||||||||||| |||||||    
T  47544247 tccaaacatggtcttaatgccttatgacattgccttttcaggatgctccaaaatagggaatcagctaaac 47544316  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 395
Target Start/End: Complemental strand, 503700 - 503625
Alignment:
Q  320 tggatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggttcc 395  Q
    ||||||||||||||  ||| |||||||||||| |||| ||| | ||  ||||||||||||||||||| || |||||    
T  503700 tggatatgaatgctggctttggtggatttgcagctgcattggtgaaatatccagtttgggttatgaatgttgttcc 503625  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 528
Target Start/End: Complemental strand, 48014499 - 48014451
Alignment:
Q  480 attaaacaatattcaatgttatatttccattgtgatttccttgattaat 528  Q
    |||||||||||||||||   ||||||| |||||||||| ||||||||||    
T  48014499 attaaacaatattcaataaaatatttcgattgtgattttcttgattaat 48014451  T

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Target: scaffold0117 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 461 - 530
Target Start/End: Complemental strand, 13662 - 13593
Alignment:
Q  461 attgaaccatttatcacatattaaacaatattcaatgttatatttccattgtgatttccttgattaatta 530  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||    
T  13662 attgaaccatttatcacatattaatcaatattcaatgttatatttccgttgtaatttccttgattaatta 13593  T

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Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 325 - 450
Target Start/End: Complemental strand, 64361 - 64236
Alignment:
Q  325 atgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggttcctgtcgaggttaaggttgatacacttggag 424  Q
    ||||||||| | ||||||||||||||| || |  |  ||||  ||||  ||||||||||||| || |||||| |  | | ||| ||||||||||||||||    
T  64361 atgaatgcttatttgggtggatttgcagcttcacttgttaaatatcctatttgggttatgaatgttgttcctattcaagctaaagttgatacacttggag 64262  T
Q  425 caatatatgaaaggggattgattgga 450  Q
    ||||||||||||| || |||||||||    
T  64261 caatatatgaaagagggttgattgga 64236  T

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