View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15449_high_61 (Length: 229)
Name: NF15449_high_61
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_high_61 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 34054909 - 34055132
Alignment:
| Q |
6 |
aagtattgcttcactcctcggtcgccaagcttttgatttggctataactgttgtccgacagcctcctttcacaatcacactgcttccaacatttgatgtc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34054909 |
aagtattgcttcactcctcggtcgccaagcttttgatttggttataactgttgtccgacagcctcctttcacaatcacactgcttccaacatttgatgtc |
34055008 |
T |
|
| Q |
106 |
attataagaagtgttcttgaagtcaacagttcttcccttactgtctgttaacctcccatctcccaggatttgaagcatcatgttgaagacatcatgatgg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34055009 |
attataagaagtgttcttgaagtcaacagttcttcccttactgtctgttaacctcccatctcccaggatttgaagcatcatgttgaagacatcatgatgg |
34055108 |
T |
|
| Q |
206 |
gctttctcaatctcatcaaagggt |
229 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
34055109 |
gctttctcaatctcatcaaagggt |
34055132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 61 - 226
Target Start/End: Complemental strand, 40245712 - 40245545
Alignment:
| Q |
61 |
cgacagcctcctttcacaatcacactgcttccaacatttgatgtcattataagaagtgt--tcttgaagtcaacagttcttcccttactgtctgttaacc |
158 |
Q |
| |
|
|||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| || |
|
|
| T |
40245712 |
cgacggcctcctttctcgatcacactgcttccaacatttgatgtcattataagaagtgtgttcttgaagtccacagttcttcccttactatctgttagcc |
40245613 |
T |
|
| Q |
159 |
tcccatctcccaggatttgaagcatcatgttgaagacatcatgatgggctttctcaatctcatcaaag |
226 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40245612 |
tcccatcttccaggatttgaagcatcatgttgaagacatcaggatgggctttctcaatctcatcaaag |
40245545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 67 - 226
Target Start/End: Complemental strand, 47382992 - 47382831
Alignment:
| Q |
67 |
cctcctttcacaatcacactgcttccaacatttgatgtcattataagaagtgt--tcttgaagtcaacagttcttcccttactgtctgttaacctcccat |
164 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| |||||||| |
|
|
| T |
47382992 |
cctcctttctcaatcacactgcttccaacatttgatgtcattataagaagtgtgttcttgaagtcgacagttcttcccttactatctgttagcctcccat |
47382893 |
T |
|
| Q |
165 |
ctcccaggatttgaagcatcatgttgaagacatcatgatgggctttctcaatctcatcaaag |
226 |
Q |
| |
|
|| |||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47382892 |
cttccagaatttgaagcatcatattgaagacatcaggatgggctttctcaatctcatcaaag |
47382831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 66 - 226
Target Start/End: Complemental strand, 45115942 - 45115780
Alignment:
| Q |
66 |
gcctcctttcacaatcacactgcttccaacatttgatgtcattataagaagtgt--tcttgaagtcaacagttcttcccttactgtctgttaacctccca |
163 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| || ||||||| || |||||||| |||| || ||| |
|
|
| T |
45115942 |
gcctcctttctcaatcacactgcttccaacatttgacgtcattataagaagtgtgttcttgaaatccacagttcggcctttactgtccgttagtcttcca |
45115843 |
T |
|
| Q |
164 |
tctcccaggatttgaagcatcatgttgaagacatcatgatgggctttctcaatctcatcaaag |
226 |
Q |
| |
|
||| | ||||| ||||||||||||||||| |||||| |||| |||||||| |||||||||||| |
|
|
| T |
45115842 |
tcttcaaggatctgaagcatcatgttgaatacatcaggatgagctttctcgatctcatcaaag |
45115780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 47818071 - 47817986
Alignment:
| Q |
83 |
cactgcttccaacatttgatgtcattataagaa--gtgttcttgaagtcaacagttcttcccttactgtctgttaacctcccatct |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |||| |||||||||| |
|
|
| T |
47818071 |
cactgcttccaacatttgatgtcattataagaagtgtgttcttgaagtcgacagttcttcccttactatcagttagcctcccatct |
47817986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 47383085 - 47383029
Alignment:
| Q |
6 |
aagtattgcttca-ctcctcggtcgccaagcttttgatttggctataactgttgtcc |
61 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||| || |||||||| ||||| |
|
|
| T |
47383085 |
aagtattgcttcagctcctcggtcaccaagcttttgattcggttataactgctgtcc |
47383029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 47818150 - 47818094
Alignment:
| Q |
6 |
aagtattgcttca-ctcctcggtcgccaagcttttgatttggctataactgttgtcc |
61 |
Q |
| |
|
||||||||||||| ||||||| || |||||||||||||| || |||||||||||||| |
|
|
| T |
47818150 |
aagtattgcttcagctcctcgatcaccaagcttttgattcggttataactgttgtcc |
47818094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University