View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_high_67 (Length: 210)
Name: NF15449_high_67
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_high_67 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 35013496 - 35013691
Alignment:
| Q |
4 |
aattctatactcattcatctcgttctaaactttatttatggtcacttgctacatcaaattaaacacatcctcattttatgatacttgttttcttagcaaa |
103 |
Q |
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| T |
35013496 |
aattctatactcattcatctcgttctaaactttatttatggtcacttgctacatcaaattaaacacatcctcattttatgctacttgttttcttagcaaa |
35013595 |
T |
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| Q |
104 |
agaaaacatgcataatgtttgataagaaaagaagtggaggacattaaataaattcacaagccatatagattattattcacataagatgatgtccat |
199 |
Q |
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| T |
35013596 |
agaaaacatgcataatgcttgataagaaaagaagtggaggacattaactaaattcacaagccatatagattattattcacataaaatgatgtccat |
35013691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 4459629 - 4459716
Alignment:
| Q |
4 |
aattctatactcattcatctcgttctaaactttatttatggtcacttgctacatcaaattaaacacatcctcattttatgatacttgt |
91 |
Q |
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||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
4459629 |
aattctatactcattcaccccgttgtaaactttatttatggtcacttgctacatcaaattaaacacattctcattttatgctacttgt |
4459716 |
T |
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