View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_low_1 (Length: 1265)
Name: NF15449_low_1
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 1033; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1033; E-Value: 0
Query Start/End: Original strand, 19 - 1255
Target Start/End: Complemental strand, 31579586 - 31578353
Alignment:
| Q |
19 |
cctttttgtacagaagtgcatgaattattgtgttagaatttaaacacttgtgaattgagcctgtcaagatcataacctacaattacttctgtttttaaag |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31579586 |
cctttttgtacagaagtgcatgaattattgtgttagaatttaaacacttgtgaattgggcctgtcaagatcataacctacaattacttctgtctttaaag |
31579487 |
T |
|
| Q |
119 |
atgtcaagctaccagcaagttttcatgaggctgctttatgaaaattgtggattgacttgcctctggagttattacagtttgcatttttgagttattctga |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31579486 |
atgtcaagctaccagcaaattttcatgaggctgctttatgaaaattgtggattgacttgcctttggagttattacagtttgcatttttgagttattctga |
31579387 |
T |
|
| Q |
219 |
gtgtcagggaagtcattggatacaacaaaaatacggtaccattggnnnnnnnnnnnnnnnnngagaaacctggattttttagttgttctagagtccagac |
318 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31579386 |
gtgccagggaagtcattggatacaacaaaaatacggtaccattggtttttttgttttgttttgagaaacctggattttttagttgttctagagtccagac |
31579287 |
T |
|
| Q |
319 |
gttccttagttgcctatgttctttttaaggaaaacatcaccccatagcaacgatgacattgtgggtccagttattccttttgctgttttacttgtggttg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31579286 |
gttccttagttgcctatgttctttttaaggaaaacatcaccccatagcaacgatgacattgtgggtccagttattccttttgctgttttacttgtggttg |
31579187 |
T |
|
| Q |
419 |
atgaagttcgctatggcatcagatcctcagatttgggaagtattgaattttcagatgatgcaaagcttggcctgaaatacaaagaagttattgagatggc |
518 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
31579186 |
atgaagttcgctatggcatcaaatcctcagatttgggaagtattgaattttcagatgatgcaaagcttggccttaaatacaaagaagttatgcagatggc |
31579087 |
T |
|
| Q |
519 |
tggtgagattgatgtgttatctcatcgatctatgcacccagatgaccatgcagtctctttgctgatgactaagaggaaccctgggctgattcttcgaaac |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
31579086 |
tggtgagattgatgtgttatctcatcgatctatgcacccagatgaccatgcagtctctttgctgatgactaagaggaaccctgggctgattcttcaaaac |
31578987 |
T |
|
| Q |
619 |
caactttttcgtcatatcgtccagcggcttgaattactctctcacagacaatgtacatggaactccatatatactgatacaatttatgatacatttattt |
718 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31578986 |
caactttttcgtcatatcgtccagcggcttgaatcactctctcacaggcaatgtacatggaactccatatatactgatacaatttatgatacatttattt |
31578887 |
T |
|
| Q |
719 |
ttcatgtttcggataattcttgtgagcagactgaacctgttggagaagagatggttgatgatctttggcccattgagttgaggttcaatgctcctgtgaa |
818 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31578886 |
ttcatgttttggataattcttgtgagcagactgaacctgttggagaagagatgtttgatgatctttggcccattgagttgaggttcaatgctcctgtgaa |
31578787 |
T |
|
| Q |
819 |
gaagtttgaacatcaaagttcaagggcatacattttattgaaaagaaagatgtatagatggcaaaaaagtttgattcatatttgtaatcaatctggattt |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31578786 |
gaagtttgaacatcaaagttcaagggcatacattttattgaaaagaaagatgtatacatggcaaaaaagtttgattcatatttgtaatcaatctggattt |
31578687 |
T |
|
| Q |
919 |
gaaaaagtagtttactgatgattcttctctcattcatcctcggctcattagaacacatttgatagcaaatagattatgtcctccacaatatgcnnnnnnn |
1018 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
31578686 |
gaaaaagtagtttactgatgattcttctctcattcatcctcggctcattagaacacatttgatagcaaatagattatgtcctccacgatatgc-ttttta |
31578588 |
T |
|
| Q |
1019 |
nnnnnnnnnnattgttgatccttagagacacattatctgataacaattgttactgttaaaggcaggctcttccttgaaggattagctccaaggtgttcat |
1118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31578587 |
ttttatttttattgttgatccttagagacacattatctgataacaattgttactgttaaaggcaggctcttccttgaaggattagctccaaggtgttcat |
31578488 |
T |
|
| Q |
1119 |
ttctttaatttgtgcatatatttatgtgnnnnnnnntgctctgatctggtttgtcttttgggctagtcattcaaaaaatgctccatattaattgtgaata |
1218 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31578487 |
ttctttaatttgtgcatacatttatgtg--aaaaaatgctctgatctggtttgtcttttgggctagtcattcaaaaaatgctccatattaattgtgaata |
31578390 |
T |
|
| Q |
1219 |
tattcaagatgttttcagtcatctactatcacctatg |
1255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
31578389 |
tattcaagatgttttcagtcatctactatcacctatg |
31578353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 3e-45; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 30940593 - 30940353
Alignment:
| Q |
17 |
cacctttttgtacagaagtgcatgaattattgtgttagaatttaaacacttgtgaattgagcctgtcaagatcataacctacaattacttctgtttttaa |
116 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||| | || ||||| |||||| ||| ||| |||||||||| ||| ||||| ||||| ||||||| |
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| T |
30940593 |
cacctttttgttcagaagttcatgaattattgtgtaaaaaattaaatgcttgtgggttgggccattcaagatcatctcctgcaatttcttctatttttaa |
30940494 |
T |
|
| Q |
117 |
agatgtcaagctaccagcaagttttcatgaggctgctttatgaaaattgtggattgacttgcctctggagttattacagtttgcatttttgagttattct |
216 |
Q |
| |
|
|||||||| |||||||||||| || || |||| ||| || |||||||||||| |||||||||| | |||||||||||||| |||||||||||||||||| |
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|
| T |
30940493 |
agatgtcacgctaccagcaagcttccacgaggttgccttgagaaaattgtggactgacttgcctttagagttattacagttagcatttttgagttattct |
30940394 |
T |
|
| Q |
217 |
gagtgtcagggaagtcattggatacaacaaaaatacggtacc |
258 |
Q |
| |
|
|| |||| | |||||||||| | ||||| |||||| |||||| |
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| T |
30940393 |
gaatgtc-gtgaagtcattgcacacaaccaaaatatggtacc |
30940353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 312 - 434
Target Start/End: Complemental strand, 30940334 - 30940212
Alignment:
| Q |
312 |
tccagacgttccttagttgcctatgttctttttaaggaaaacatcaccccatagcaacgatgacattgtgggtccagttattccttttgctgttttactt |
411 |
Q |
| |
|
||||||| ||||| || ||||| ||||||| |||||||| |||||||||||||| || |||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
30940334 |
tccagaccttcctcagctgcctccgttctttctaaggaaaccatcaccccatagcgacaatgacattgtgggtccagttattcctttccctgttttactt |
30940235 |
T |
|
| Q |
412 |
gtggttgatgaagttcgctatgg |
434 |
Q |
| |
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||| || |||||||||||||||| |
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|
| T |
30940234 |
gtgattaatgaagttcgctatgg |
30940212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1053 - 1144
Target Start/End: Complemental strand, 30939633 - 30939543
Alignment:
| Q |
1053 |
atctgataacaattgttactgttaaaggcaggctcttccttgaaggattagctccaaggtgttcatttctttaatttgtgcatatatttatg |
1144 |
Q |
| |
|
|||||||| ||||| ||||||||| | |||||||| |||| |||| |||||||||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
30939633 |
atctgatagcaattattactgttacacacaggctctcccttaaagggttagctccaaggtgttactttctttaa-ttgtgcatatatttatg |
30939543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 740 - 830
Target Start/End: Complemental strand, 30939927 - 30939837
Alignment:
| Q |
740 |
gtgagcagactgaacctgttggagaagagatggttgatgatctttggcccattgagttgaggttcaatgctcctgtgaagaagtttgaaca |
830 |
Q |
| |
|
||||| |||||||| |||| |||||||||||| ||||||||||||| || ||| |||| |||| |||||||||||| ||||||||||| |
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|
| T |
30939927 |
gtgagaagactgaatctgtcggagaagagatgtttgatgatctttgcccaattacgttgcggtttgatgctcctgtgaccaagtttgaaca |
30939837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 689 - 731
Target Start/End: Complemental strand, 30939990 - 30939948
Alignment:
| Q |
689 |
atactgatacaatttatgatacatttatttttcatgtttcgga |
731 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | |||||||| |
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|
| T |
30939990 |
atactgataccatttatgatacatttatttttaaggtttcgga |
30939948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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