View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15449_low_10 (Length: 537)
Name: NF15449_low_10
Description: NF15449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15449_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 19 - 521
Target Start/End: Original strand, 19288165 - 19288670
Alignment:
| Q |
19 |
gaattgggctattcatctattattatttttctctctacttatcaaaattttaattcttcctcccc-cacttatatttcagaaggtattgtcaatcaatct |
117 |
Q |
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| T |
19288165 |
gaattgggctattcatctattattatttttcactctgct-atcaaaattttaattcttcctccccccacttatatttcagaaggtattgtcaatcaatct |
19288263 |
T |
|
| Q |
118 |
ctcgtcgctaatcatacttattttcctatttctgccgatgatttaagtatgttaggaaaatagttctttataaaggaagtgaaatgtgccttgttctcta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19288264 |
ctcgtcgctaatcatacttattttcctatttctgccgatgatttaagtatgttaggaaaatagttctttataaaggaagtgaaatgtgccttgttctcta |
19288363 |
T |
|
| Q |
218 |
tgggaaatttcaaagctccgggaatggatggttttcatcccattttcttcaagaaaaattgtgatacttttggctcgtccattttttattttacaaacaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19288364 |
tgggaaatttcaaagctccgggaatggatggttttcatcccattttcttcaagaaaaattgggatacttttggctcgtccattttttattttacaaacaa |
19288463 |
T |
|
| Q |
318 |
ggtattttttaacctagagttaattacaaatgttaatagcacccaactaacctttattcccaaaggtattgaaccttctaaagcctctaacttctaaccc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19288464 |
ggtattttttaacctagagttaattacaaatgttaatagcacccaactaacttttattcccaaaggtattgaaccttctaaagcctctaacttctaaccc |
19288563 |
T |
|
| Q |
418 |
atatctctttgtaacgtgattgataagattg---tgactatattaatagctaacaagcttatggaagtaatgcctaaaattattttgcccaatcaaaata |
514 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19288564 |
atatctctttgtaacgtgattgataagattgtgatgactatattaatagctaacaagcttatggaagtaatgcctaaaattattttgcccaatcaaaata |
19288663 |
T |
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| Q |
515 |
gcttcat |
521 |
Q |
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| T |
19288664 |
gcttcat |
19288670 |
T |
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